Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4103 |
Symbol | |
ID | 5105622 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4494721 |
End bp | 4496853 |
Gene Length | 2133 bp |
Protein Length | 710 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640505367 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_001189582 |
Protein GI | 146309117 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.615047 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGACGCC TGGTCGTACC GCTTCTCGCC CTACCCGCCT TCGCCTGCCA CACCGCCTTC GCCAGCACGG ACAGCGACAC GCCGCTGGCC CTGGAGGAAA TGCAGATCAC CGCCCCTACG GAGCAAGCCG ATGGGCCGAT CGACGGCTAT CGCGCCACCC GCTCGGCCAG CGCGACGCGC ACCGATACGC CGATCCATGA AATCCCGCAG TCGATCAGCG TGGTGCCGGC GCAGGTGGTG CAGGACATCG GCGCGGTGCG CCTGGAAGAT GCGCTGGATT ACGCCGGCGG CGTGGAGCGC GGCAACAACT TCGGTGGCCA GGGTCTGACC GAATTTCTGA TTCGCGGCTT CACCAGCCAG GAGTTCTACC GCAACGGTTT CGCCGTCAAC CGTGGCTACC CGAACATGCC CGACGCCAGC ACCATCGAGC GCATCGAAGT GCTGCGTGGC CCGGCGGCCA TGCTCTACGG CCGTAGCGAT CCGGGCGGCA CCTTCAACAT CGTCAGCAAG CAGCCGCAGG CCGAGCGCCG CACCGTGCTG GGCAGCCAGG TCAACAGCGA AGGCCTGCGC CGCGGCACCC TGGACACCAC CGGTGCGCTG GACGAACAGG CCGCCTTCAC CTACCGCCTC AACCTGGTGG CCGAGGGCGG CGACAGCTTC CGCGATGACG TCGAGAGCGA GCGCTACAAC GTCGCCCCGG TGCTGCGCTG GCAGCTCAAC GAAGACACCG CCGTCACCCT CGAAGGCGAC TACCTGCACA ACCGCCACCC GCTCGACCGT GGCGTCACCC GCTACTCCAA CCAGAACGGC AAGCTGCCGC GCGACCGCTT CCTCGGCGAG GAATCCGCCG GCAAGCTGAC CAACGAGAAC GCCACTACCC AGCTGCGCAT CGAACACCTG CTGAGCGACA GCTGGACCCT GCGCGGCGGC GTGCAGTACC TCGATGGCGA GATCCATGGC GGCGCCGTGG AGAACAACAG CAACGCCTAC ACCGGCTTGC CTGCAGGCGC CAGCAGCATC GGGCGCAACT ACAACGAGCG TTGGCTGAAC TGGAACGACA TCAACGCCCA GGCCAATGCC GAAGGAAATT TCGACCTCGC CGGCTTCGCC CATACCCTGC TGCTGGGCGT GGAGTACGAC AAGTTCAACT ACAACTCGCT GATCCGCCGC TCGCCGGGCG GCGATGCCTA CCCCATCGAT ATCTACAACC CGGTGCATGG CCAGCCGCTG CCGGCGCTGA CCCGCACCAC CACCCACGAC AGCGAGAACC TCGAGTCCTA CGCCTTCTTC GTCCAGGACC AGATCGCCCT GACCGAACGC CTCAAGGCGC AACTGGGTGT GCGCATCGAG CGCTTCGAGC AGAGCTATAA CGACAAGCTC AACCCCAACG GCAGCTGGGA CCAGGCGCAT AACGCCGTCT CGCCGCGCTT CGGCCTGATC TACGACCTCA CCGACGAACT GGCGGTGTTC GCCAACACCT CGCGCTCGTT CAAGCCCAAC CGCGGCGCCG ACCGCCTGGG TAATTCCTTC GACCCGGAAA AAGGCGTCGC TCACGAGGTC GGCATCAAGT ACGACCTGGC TGACCGCGAC CTGAGCCTGA CCGCCGCGCT GTTCCATATC GTCAAGGAAA ACGTGCTGAC CAGCGACCCG CTGGATAGCA CCCGCAGCAT CGCCGCCGGT GAAGTGCGCA GCCGTGGCTT CGATATCAAT CTGGCCGGCA ATATCACCCC GCAATGGCGG GTAATCGGCG GCTATGCCTA CGTCGACGCC GAAGTCACCG AAAGCACCAG CGCCACCATG CCGGTGGGCA CGCGCCTGGG CAACGTGCCG CGGCACAGCT TCAACCTGCT CGATACCTAC GAGTTCGACG GCGGCCCGCT GGCCGGCCTG GGCCTGGGCA TCGGTCTGAA GTACGTCAGC GAGCGCCAGG GCCAGACCAG CAACAACACC TTCGACATGG ACGGCTACGG CCTGGTCGAC CTGCTGGCCT ACTACCCGCT GACCGAAAAC GTGCGCCTGA ACCTCAATCT GAACAATGTG TTCGACAAGC ACTACGAGGA ACGCGCCTGG AACTCCTGGG CCTACCCGGG TGAACCGCGC ACGCTGCAGG CGGGGATTTC GGTCAGTCTG TAA
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Protein sequence | MRRLVVPLLA LPAFACHTAF ASTDSDTPLA LEEMQITAPT EQADGPIDGY RATRSASATR TDTPIHEIPQ SISVVPAQVV QDIGAVRLED ALDYAGGVER GNNFGGQGLT EFLIRGFTSQ EFYRNGFAVN RGYPNMPDAS TIERIEVLRG PAAMLYGRSD PGGTFNIVSK QPQAERRTVL GSQVNSEGLR RGTLDTTGAL DEQAAFTYRL NLVAEGGDSF RDDVESERYN VAPVLRWQLN EDTAVTLEGD YLHNRHPLDR GVTRYSNQNG KLPRDRFLGE ESAGKLTNEN ATTQLRIEHL LSDSWTLRGG VQYLDGEIHG GAVENNSNAY TGLPAGASSI GRNYNERWLN WNDINAQANA EGNFDLAGFA HTLLLGVEYD KFNYNSLIRR SPGGDAYPID IYNPVHGQPL PALTRTTTHD SENLESYAFF VQDQIALTER LKAQLGVRIE RFEQSYNDKL NPNGSWDQAH NAVSPRFGLI YDLTDELAVF ANTSRSFKPN RGADRLGNSF DPEKGVAHEV GIKYDLADRD LSLTAALFHI VKENVLTSDP LDSTRSIAAG EVRSRGFDIN LAGNITPQWR VIGGYAYVDA EVTESTSATM PVGTRLGNVP RHSFNLLDTY EFDGGPLAGL GLGIGLKYVS ERQGQTSNNT FDMDGYGLVD LLAYYPLTEN VRLNLNLNNV FDKHYEERAW NSWAYPGEPR TLQAGISVSL
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