Gene Pmen_4103 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4103 
Symbol 
ID5105622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4494721 
End bp4496853 
Gene Length2133 bp 
Protein Length710 aa 
Translation table11 
GC content65% 
IMG OID640505367 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_001189582 
Protein GI146309117 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4774] Outer membrane receptor for monomeric catechols 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.615047 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACGCC TGGTCGTACC GCTTCTCGCC CTACCCGCCT TCGCCTGCCA CACCGCCTTC 
GCCAGCACGG ACAGCGACAC GCCGCTGGCC CTGGAGGAAA TGCAGATCAC CGCCCCTACG
GAGCAAGCCG ATGGGCCGAT CGACGGCTAT CGCGCCACCC GCTCGGCCAG CGCGACGCGC
ACCGATACGC CGATCCATGA AATCCCGCAG TCGATCAGCG TGGTGCCGGC GCAGGTGGTG
CAGGACATCG GCGCGGTGCG CCTGGAAGAT GCGCTGGATT ACGCCGGCGG CGTGGAGCGC
GGCAACAACT TCGGTGGCCA GGGTCTGACC GAATTTCTGA TTCGCGGCTT CACCAGCCAG
GAGTTCTACC GCAACGGTTT CGCCGTCAAC CGTGGCTACC CGAACATGCC CGACGCCAGC
ACCATCGAGC GCATCGAAGT GCTGCGTGGC CCGGCGGCCA TGCTCTACGG CCGTAGCGAT
CCGGGCGGCA CCTTCAACAT CGTCAGCAAG CAGCCGCAGG CCGAGCGCCG CACCGTGCTG
GGCAGCCAGG TCAACAGCGA AGGCCTGCGC CGCGGCACCC TGGACACCAC CGGTGCGCTG
GACGAACAGG CCGCCTTCAC CTACCGCCTC AACCTGGTGG CCGAGGGCGG CGACAGCTTC
CGCGATGACG TCGAGAGCGA GCGCTACAAC GTCGCCCCGG TGCTGCGCTG GCAGCTCAAC
GAAGACACCG CCGTCACCCT CGAAGGCGAC TACCTGCACA ACCGCCACCC GCTCGACCGT
GGCGTCACCC GCTACTCCAA CCAGAACGGC AAGCTGCCGC GCGACCGCTT CCTCGGCGAG
GAATCCGCCG GCAAGCTGAC CAACGAGAAC GCCACTACCC AGCTGCGCAT CGAACACCTG
CTGAGCGACA GCTGGACCCT GCGCGGCGGC GTGCAGTACC TCGATGGCGA GATCCATGGC
GGCGCCGTGG AGAACAACAG CAACGCCTAC ACCGGCTTGC CTGCAGGCGC CAGCAGCATC
GGGCGCAACT ACAACGAGCG TTGGCTGAAC TGGAACGACA TCAACGCCCA GGCCAATGCC
GAAGGAAATT TCGACCTCGC CGGCTTCGCC CATACCCTGC TGCTGGGCGT GGAGTACGAC
AAGTTCAACT ACAACTCGCT GATCCGCCGC TCGCCGGGCG GCGATGCCTA CCCCATCGAT
ATCTACAACC CGGTGCATGG CCAGCCGCTG CCGGCGCTGA CCCGCACCAC CACCCACGAC
AGCGAGAACC TCGAGTCCTA CGCCTTCTTC GTCCAGGACC AGATCGCCCT GACCGAACGC
CTCAAGGCGC AACTGGGTGT GCGCATCGAG CGCTTCGAGC AGAGCTATAA CGACAAGCTC
AACCCCAACG GCAGCTGGGA CCAGGCGCAT AACGCCGTCT CGCCGCGCTT CGGCCTGATC
TACGACCTCA CCGACGAACT GGCGGTGTTC GCCAACACCT CGCGCTCGTT CAAGCCCAAC
CGCGGCGCCG ACCGCCTGGG TAATTCCTTC GACCCGGAAA AAGGCGTCGC TCACGAGGTC
GGCATCAAGT ACGACCTGGC TGACCGCGAC CTGAGCCTGA CCGCCGCGCT GTTCCATATC
GTCAAGGAAA ACGTGCTGAC CAGCGACCCG CTGGATAGCA CCCGCAGCAT CGCCGCCGGT
GAAGTGCGCA GCCGTGGCTT CGATATCAAT CTGGCCGGCA ATATCACCCC GCAATGGCGG
GTAATCGGCG GCTATGCCTA CGTCGACGCC GAAGTCACCG AAAGCACCAG CGCCACCATG
CCGGTGGGCA CGCGCCTGGG CAACGTGCCG CGGCACAGCT TCAACCTGCT CGATACCTAC
GAGTTCGACG GCGGCCCGCT GGCCGGCCTG GGCCTGGGCA TCGGTCTGAA GTACGTCAGC
GAGCGCCAGG GCCAGACCAG CAACAACACC TTCGACATGG ACGGCTACGG CCTGGTCGAC
CTGCTGGCCT ACTACCCGCT GACCGAAAAC GTGCGCCTGA ACCTCAATCT GAACAATGTG
TTCGACAAGC ACTACGAGGA ACGCGCCTGG AACTCCTGGG CCTACCCGGG TGAACCGCGC
ACGCTGCAGG CGGGGATTTC GGTCAGTCTG TAA
 
Protein sequence
MRRLVVPLLA LPAFACHTAF ASTDSDTPLA LEEMQITAPT EQADGPIDGY RATRSASATR 
TDTPIHEIPQ SISVVPAQVV QDIGAVRLED ALDYAGGVER GNNFGGQGLT EFLIRGFTSQ
EFYRNGFAVN RGYPNMPDAS TIERIEVLRG PAAMLYGRSD PGGTFNIVSK QPQAERRTVL
GSQVNSEGLR RGTLDTTGAL DEQAAFTYRL NLVAEGGDSF RDDVESERYN VAPVLRWQLN
EDTAVTLEGD YLHNRHPLDR GVTRYSNQNG KLPRDRFLGE ESAGKLTNEN ATTQLRIEHL
LSDSWTLRGG VQYLDGEIHG GAVENNSNAY TGLPAGASSI GRNYNERWLN WNDINAQANA
EGNFDLAGFA HTLLLGVEYD KFNYNSLIRR SPGGDAYPID IYNPVHGQPL PALTRTTTHD
SENLESYAFF VQDQIALTER LKAQLGVRIE RFEQSYNDKL NPNGSWDQAH NAVSPRFGLI
YDLTDELAVF ANTSRSFKPN RGADRLGNSF DPEKGVAHEV GIKYDLADRD LSLTAALFHI
VKENVLTSDP LDSTRSIAAG EVRSRGFDIN LAGNITPQWR VIGGYAYVDA EVTESTSATM
PVGTRLGNVP RHSFNLLDTY EFDGGPLAGL GLGIGLKYVS ERQGQTSNNT FDMDGYGLVD
LLAYYPLTEN VRLNLNLNNV FDKHYEERAW NSWAYPGEPR TLQAGISVSL