| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4101 |
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| Symbol | |
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| ID | 5105620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4492439 |
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| End bp | 4494208 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640505365 |
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| Product | Na+/solute symporter |
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| Protein accession | YP_001189580 |
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| Protein GI | 146309115 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4147] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAT TCGTCATCAA CATGTTGTTC GTAGGCGCGT CCTTCGCGCT CTACATCGGC
ATCGCCATCT GGGCGCGTGC CGGCTCCACC AAAGAGTTCT ACGTCGCCGG CGGTGGTGTG
CATCCCGTCA CCAACGGTAT GGCGACCGCT GCCGACTGGA TGTCGGCTGC ATCCTTCATT
TCCATGGCGG GCCTGATCGC CGCCGGTGGT TATGCCAACT CCACCTTCCT CATGGGCTGG
ACCGGCGGCT ACGTGTTGCT GGCGATGCTG CTGGCACCCT ACCTGCGCAA GTTCGGCAAG
TTCACCGTGC CGGATTTCAT CGGCGACCGC TTCTACAGCC GTGGTGCGCG TCTGACGGCG
GTGATCTGCC TGGTGATCAT CTCCGTGACC TACGTGATCG GTCAGATGGC CGGTGCCGGC
GTGGCCTTCT CGCGCTTCCT CGAGGTGAGC AACTCCACCG GTATCTGGAT CGCGGCCGGC
GTGGTATTCG CCTATGCCGT ATTCGGCGGC ATGAAGGGCA TCACCTACAC CCAGGTCGCT
CAGTACGTGG TACTGATCGT GGCCTACACC ATCCCGGCGA TCTTCATCTC CCTGCAGCTG
ACCGGTAACC CGATTCCGCC GCTGGGCCTG TTCGGTGACC ATGTCGAGTC CGGCGTGCCG
CTGCTGCAGA AGCTCGATGA AGTGGTACGC GAGCTGGGCT TCTCCGCCTA CACCGCCGAT
GTCAGCAACA AGCTGAACAT GGTGCTGTTC ACCCTGTCGC TGATGATCGG TACTGCCGGT
CTGCCGCACG TGATCATCCG CTTCTTCACC GTGCCGAAGG TTTCCGACGC ACGCTGGTCG
GCTGGCTGGA CCCTGGTGTT CATCGCCCTG CTGTACCTCA CCGCTCCGGC AGTCGCCTCG
ATGGCGCGTC TGAACCTGGT CACCACCATT TATCCGCAGG GCGCTTCTGC CCCGGCGCTG
GCCTACGAAG AACGTCCTGA GTGGGTCAAG ACCTGGGAGC AGACCGGCCT GATCAAGTGG
GAAGACAAGA ACGGCGACGG CCGCATTCAG ATGTACAACG ATGCCGCCCC GGCCTTCACC
GCTACCGCTC AGGAGCGCGG CTGGAACGGC AACGAGCTGA CCGTGAACAA CGACATCCTG
GTTCTGGCCA ACCCGGAGAT CGCCAACCTG CCCGGCTGGG TGGTGGGTCT GATCGCTGCC
GGTGCCATCG CTGCGGCACT GTCGACGGCG GCGGGTCTGT TGCTGGCGAT CTCTTCGGCC
ATCAGTCATG ACCTGATCAA GACCTTGATC AATCCGAAGA TCAGCGAGAA GGGGGAAATG
CGCGCAGCGC GGATCTCCAT GGCGTGTGCG ATCCTGCTGG CAACCTACCT GGGTCTGAAT
CCGCCAGGGT TCGCCGCGCA GGTGGTGGCG CTGGCCTTCG GTATCGCGGC TGCAACCCTG
TTCCCGGTGC TGATGATGGG GATCTTCTCC AAGCGCATGA ACGACAAGGG CGCGATCTGC
GGCATGGTCG CCGGCCTGGT GGTCACCCTG CTGTACATCT TCACCTACCT GGGCTGGTTC
TTCATTCCGG AGACCAACAT GCTGCCCAAT ACCCCGGACC AGTGGTTCAT GGGTATCTCC
CCGGCTTCCT TCGGTTCCGT CGGTGCCCTG ATCAACTTCG CCGTGGCTTA CGCCGTGTCG
ATGGTCACCG CCGAACCGCC GCAGGAAATC CAGGATCTGG TGGAAAGCGT ACGTACTCCC
AAAGGTGCTG GTGCCGCTCT GAGCCACTAA
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| Protein sequence | MSQFVINMLF VGASFALYIG IAIWARAGST KEFYVAGGGV HPVTNGMATA ADWMSAASFI
SMAGLIAAGG YANSTFLMGW TGGYVLLAML LAPYLRKFGK FTVPDFIGDR FYSRGARLTA
VICLVIISVT YVIGQMAGAG VAFSRFLEVS NSTGIWIAAG VVFAYAVFGG MKGITYTQVA
QYVVLIVAYT IPAIFISLQL TGNPIPPLGL FGDHVESGVP LLQKLDEVVR ELGFSAYTAD
VSNKLNMVLF TLSLMIGTAG LPHVIIRFFT VPKVSDARWS AGWTLVFIAL LYLTAPAVAS
MARLNLVTTI YPQGASAPAL AYEERPEWVK TWEQTGLIKW EDKNGDGRIQ MYNDAAPAFT
ATAQERGWNG NELTVNNDIL VLANPEIANL PGWVVGLIAA GAIAAALSTA AGLLLAISSA
ISHDLIKTLI NPKISEKGEM RAARISMACA ILLATYLGLN PPGFAAQVVA LAFGIAAATL
FPVLMMGIFS KRMNDKGAIC GMVAGLVVTL LYIFTYLGWF FIPETNMLPN TPDQWFMGIS
PASFGSVGAL INFAVAYAVS MVTAEPPQEI QDLVESVRTP KGAGAALSH
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