| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4084 |
|---|
| Symbol | bioD |
|---|
| ID | 5106381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4474179 |
|---|
| End bp | 4474865 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640505348 |
|---|
| Product | dithiobiotin synthetase |
|---|
| Protein accession | YP_001189563 |
|---|
| Protein GI | 146309098 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0132] Dethiobiotin synthetase |
|---|
| TIGRFAM ID | [TIGR00347] dethiobiotin synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.610971 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCACG CTTACTTCGT TACCGGCACC GATACCGAAA TTGGCAAGAC CACCATCGCC
GCCGGCCTGC TGCATGCCGC GCGTCTGCGA GGGCTGAGCA CGGCGGCGGC CAAACCGGTG
GCCTCCGGCT GCGTCGCGAG CGCCGATGGC CTGCGCAATG ACGATGCCCT CGCGCTGCTT
GCGCAGTGCT CCCTGCCGCT GCGCTACGAG GAGGTCAACC CCTTCGCCTT CGCGCCGGCC
ATCGCGCCGC ATCTGGCAGC GCGCGAGGCC GGGGTAAGGC TGGATGTCGC CAGCCTGCTC
GGGCCGGTAA GGACGATCCT GGCCAAGGGC GCGGACTTCG CTCTGGTGGA AGGTGCCGGT
GGCTGGCGTG TGCCCCTGGC CGGCGCCGAG AACCTCTCCG ACTTCGCCGT GGCGCTCGAG
CTACCGGTGA TTCTGGTGGT GGGTGTGCGC CTGGGCTGCA TCAACCATGC GCTGCTCAGC
GCGGAGGCCA TCGCACGTGA CGGCCTGAGC CTGGCGGGGT GGGTGGCCAA CGTGGTCGAC
CCGCACACCT CGCGCCTGGA GGAAAACCTC GCCACCCTGG CCGAGCGCCT GCCTGCTCCT
TGCCTGGGCC GTGTGCCGCA CCTGGCGAGC GCTTCGGCCG CTGCAGTGGC GGAGCATCTC
AGCCTTGAGC GGCTGGCAGA CTGGTAA
|
|---|
| Protein sequence | MTHAYFVTGT DTEIGKTTIA AGLLHAARLR GLSTAAAKPV ASGCVASADG LRNDDALALL
AQCSLPLRYE EVNPFAFAPA IAPHLAAREA GVRLDVASLL GPVRTILAKG ADFALVEGAG
GWRVPLAGAE NLSDFAVALE LPVILVVGVR LGCINHALLS AEAIARDGLS LAGWVANVVD
PHTSRLEENL ATLAERLPAP CLGRVPHLAS ASAAAVAEHL SLERLADW
|
|---|
| |