Gene Pmen_4069 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4069 
Symbol 
ID5106366 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4456191 
End bp4457726 
Gene Length1536 bp 
Protein Length511 aa 
Translation table11 
GC content69% 
IMG OID640505333 
Producthistidine ammonia-lyase 
Protein accessionYP_001189548 
Protein GI146309083 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2986] Histidine ammonia-lyase 
TIGRFAM ID[TIGR01225] histidine ammonia-lyase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.790613 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones62 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACACCC TGAACCTGAA ACCCGGCCAG CTGACCCTGG CCGACCTGCG CGCCGCCTAC 
CAGGCGCCCG TGCACCTGAC CCTGGACGCC AGCGCCCACC AGGCCATCGA CGCCAGCGTC
GCCTGCGTCA ACCAGATCAT CGCCGAGGGG CGCACCGCCT ACGGCATCAA CACCGGTTTC
GGCCTGCTGG CCTCGACCCG CATCGCCAAC GCCGATCTGG AAAAGCTGCA GCGCTCGCTG
GTGCTGTCCC ACGCCGCCGG CATCGGCGAG CCGCTGAGCG ATGCCATGGT GCGCCTGATC
ATGCTGCTCA AGATCAACAG CCTGGCGCGC GGCTTCTCCG GCATCCGCCG CAAGGTGATC
GATGCGCTGA TCGCCCTGGT CAATGCCGAG GTCTATCCGC ATATCCCGCT GAAGGGCTCG
GTCGGCGCGT CCGGCGACCT GGCGCCGCTG GCGCATATGT CGCTGGTGCT GCTCGGCGAA
AGCCAGGCGC GCTACAAGGG TGAATGGCTG CCGGCCACCG AGGCGCTGGC CATCGCCGGC
CTGGAGCCCA TGACCCTGGC CGCCAAGGAG GGCCTGGCCC TGCTCAACGG CACCCAGGTG
TCCACCGCCT ACGCCCTGCG CGGGCTGTTC GAGGCCGAGG ACCTGTACGC CGCCGCCAGC
GTCTGCGGCG CGCTCAGCGT CGAGGCGCTG CTGGGTTCGC GTTCGCCCTT CGATGCGCGT
ATCCATGCCG CCCGTGGTCA GCGCGGGCAG ATCGACGCGG CAGCGGCGTT CCGTCACCTG
CTCGGCGACA GCAGCGAGAT CGGCCGTTCC CACGCGGCCT GCGACAAGGT GCAGGACCCG
TACTCGCTGC GCTGCCAGCC GCAGGTCATG GGCGCCTGCC TGACCCAGCT ACGTCAGGCC
GCCGAGGTGC TCGGCGTCGA GGCCAACGCG GTATCCGACA ACCCGCTGGT GTTCGCCGCC
GAAGGCGAGG TGATTTCCGG TGGCAACTTC CACGCCGAGC CGGTGGCCAT GGCCGCCGAC
AATATCGCCC TGGCCATCGC CGAGATCGGC TCGCTGTCCG AACGGCGCAT CTCGCTGATG
ATGGACAAGC ACATGTCGCA ACTGCCGCCG TTCCTGGTGG CCAATGGCGG GGTCAACTCC
GGCTTCATGA TCGCCCAGGT GACGGCGGCA GCATTGGCCA GCGACAACAA GGCGCTGTCC
CACCCGCACA GCGTCGACAG CCTGCCCACC TCGGCCAACC AGGAAGACCA CGTGTCCATG
GCACCGGGTG CGGGCAAGCG CCTGTGGGAA ATGGCCGCCA ACACCCGCGG CATCCTCGCC
GTGGAATGGC TGGGCGCCTG CCAGGGCCTG GACTTCCGCG AGGGCCTGAA GAGCACGCCG
GCGCTGGAGC AGGCGCGCCA GACGCTGCGC GCCAAGGTGC CGTACTACGT CGAGGACCGC
TTCTTCGCCC CGGACATCGC CGCCGCTGAT GCTCTGCTCG CCGAGCGCGT GCTGACGCCG
CTGCTGCCGG CCGGCATGTT GCCGTCGGTA GGCTGA
 
Protein sequence
MNTLNLKPGQ LTLADLRAAY QAPVHLTLDA SAHQAIDASV ACVNQIIAEG RTAYGINTGF 
GLLASTRIAN ADLEKLQRSL VLSHAAGIGE PLSDAMVRLI MLLKINSLAR GFSGIRRKVI
DALIALVNAE VYPHIPLKGS VGASGDLAPL AHMSLVLLGE SQARYKGEWL PATEALAIAG
LEPMTLAAKE GLALLNGTQV STAYALRGLF EAEDLYAAAS VCGALSVEAL LGSRSPFDAR
IHAARGQRGQ IDAAAAFRHL LGDSSEIGRS HAACDKVQDP YSLRCQPQVM GACLTQLRQA
AEVLGVEANA VSDNPLVFAA EGEVISGGNF HAEPVAMAAD NIALAIAEIG SLSERRISLM
MDKHMSQLPP FLVANGGVNS GFMIAQVTAA ALASDNKALS HPHSVDSLPT SANQEDHVSM
APGAGKRLWE MAANTRGILA VEWLGACQGL DFREGLKSTP ALEQARQTLR AKVPYYVEDR
FFAPDIAAAD ALLAERVLTP LLPAGMLPSV G