Gene Pmen_4067 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4067 
Symbol 
ID5106364 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4454269 
End bp4454928 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content63% 
IMG OID640505331 
Productendonuclease I 
Protein accessionYP_001189546 
Protein GI146309081 
COG category[L] Replication, recombination and repair 
COG ID[COG2356] Endonuclease I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0378834 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones60 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCACTG CCATCCTGCT TCTCGGTTGC CTGGCAACCT GTATCAGCCT GCCTGCCGTC 
GCCAGCGGGC AGAATCAGCT GGGCGACCCC AAGCAGGCCA TCGAACAAGC CTTCTGGAAA
GACCTCTACG GCACCGGCGG TACTTCGCTG TACTGCGGCC AGACGTTCAC GACTCCCGGC
AGCACCTTCA CCGCCAGCCC CATCTACAGC AGCAAGCAGC TCAAGAGCGC GCTGCGCTGC
GTCACCGACC GCCAGTGCAC CATCATGAAT CCGCGCTACC CCTTTATCGC GGCGGATCTG
CACAACCACT ACCCGGCCCT GACCCGCGTC GAGCTGGCAC GACGCAATGC CCAGTTCGCC
GAGCTGGCCG CCGACGTGCC GAGCAAGTTC GCCGACATCG GCTGCGACAT GAAGACCAGC
TTCCAGCTGG TGGAGCCACG CGACGAGGCC AAGGGCAATA TCGCCCGGGC GATCTTCTAC
ATGCACGTGG AGTACGACCT GCCCATCGTC GGCCTGGTGT CGATGTACAA GAACTGGCAC
CGCATGGACC CGCCGGACGC GGAAGAAAAG GCGCGCAACG ACAAGATCGA GGTGCTGCAG
GGCACGCGCA ATCGCTTTAT CGACGATCCG TCACTGGTGG ATCAGCTGAT CGCCGATTGA
 
Protein sequence
MRTAILLLGC LATCISLPAV ASGQNQLGDP KQAIEQAFWK DLYGTGGTSL YCGQTFTTPG 
STFTASPIYS SKQLKSALRC VTDRQCTIMN PRYPFIAADL HNHYPALTRV ELARRNAQFA
ELAADVPSKF ADIGCDMKTS FQLVEPRDEA KGNIARAIFY MHVEYDLPIV GLVSMYKNWH
RMDPPDAEEK ARNDKIEVLQ GTRNRFIDDP SLVDQLIAD