| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4064 |
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| Symbol | |
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| ID | 5106361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4449043 |
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| End bp | 4451553 |
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| Gene Length | 2511 bp |
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| Protein Length | 836 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640505328 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001189543 |
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| Protein GI | 146309078 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.200466 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCTAG GTCACAGCAG GACCCGCCAC GCGGGCTTTC GTATCAGCAC CCTGGCGCTG
GCCATCGCCG CCAGCGCCGT CGCCCTGGCC GAAGAGCCGG TAGTGCTCGA ACACGTCGAG
GTGGTCGGCC AGGCCGCCAG CATCGACAAG GCGCTGCAGG ATCAGCGTCG CTCCGACAGC
GTCACCAGCG TGGTGCACGC CGACGGCATC GGCCAGTTGC CGGACGACAA CGCCGCCGAG
GCGCTACAGC GCATTCCCGG CCTGTCGGTG GAGCGCGACC AGGGCGAGGG GCGCTTCGTC
AGCGTGCGTG GCATCGGCCC GGATCTCAAC GCCGTGACCA TCAACGGCAC CCTGGTGCCG
GCACCGGAGA GCAAGCGCCG CGCGGTGGCC CTCGACGTGC TGCCGGCCGA GCTGGTGCAG
TCGCTGTCGG TGGTCAAGAC CCTTACCCCG GACATGGACG CCAACTCCCT CGGCGGCACC
GTGCAGGTGG AAAGCCTCTC GGCCTTCGAC CACGACGGCC TGTTCTACAG CCTCAGCAGC
GAGGCCAGCT ACAACGACAA GAGCGACCAG ACCAGCCCGA AATTCTCCGG CGCCATCAGC
GAGCGCTTCA GCCTCGGCGA CGGCATCGAC AACTTCGGCG TGGCCGCGGC GCTGAGCTGG
CAGCAGCGCG ATTTCGCCTC CGACAATCTG GAGACCGGTA GCGCCTGGGA CTTCAGCGAC
GGCGCCCGGC TCGAGGAGCT GGAACAACGC GCCTACGACA TCCGCCGCGA GCGCACCGGC
CTGGGTCTGA ACTTCGACTA CAAGCCGGAC GACGAGTCCA GCTACTACCT GCGCACGCTC
TACAGCCGCT ACAAGGACAC GGAAACGCGC AACGCCGCCG GCGTCGAGTT CGCCGACGCG
CAGTTGCCCG GTGAGAGCGG CGAAGCCGAA GGCTGGCGTG AGCTCAAGAG CCGCGAAGAA
ACCCAGCAGA TCCAGTCCTA CGTGTTCGGC GGCGAGCGCA ACCTGGGTCT GTGGACGGTC
AGTGGCCAGC TCGGTTACAG CAAGGCCAGC GAGAAGACCC CGGAAGGCAT CGCCGGCGCC
ACTTTCGAGG GCAACGACGA CTTTGCCGAT GTCGGCTTCG GCGGCACGCG CAAGCCGAAG
CTGAACGTCG GTTCGGCCTT CTACGACCCG GCCAACTTCA CCCTCGACGA GGTAGAGTGG
GAGAAACAGA AGACCACCGA CACCGAAAAG AACATCAAGC TCGACCTGGC CCGCGACTAC
GAGATGAGCG GCTATGCGGC GCAGGCCAAG TTCGGTGGCA AGCTCAGCCG GCGCAAGAAG
GACAACGACC TGGAGGCCTG GGTCTACGAA GACCTGGGCG ACTTCGGCCT GACGGACGAG
CAGCTCAACC TCGGCCAGTT CGTCAAGGGT GAGGTCGACT ACGGTCTCGG CCGCTTCGGC
CCGGGCATCA GCGCCAAGGC CATCGAGCGC CTGCTCGCCG GGCTGAACAA GGCTGACTTC
TACGACGAGG AGGAGTCGCG CATCAACGAT TTCAAGATGC GCGAGGACAT CAACGCCGCC
TACCTGATGA ACAGCGTCGA CATCGACGAC TGGCGCTTTA TCGCCGGGGT GCGCTACGAG
GGCACCGAGT TCGAGGCCAA GGGCACCGGC CTGCGTGACG ATGTCTACGA ATCGATCGAC
AGCCGCAAGC GCTACGACCA CTGGCTGCCG GGCCTGCATG CGCGCTACCA GCTCGACGAA
CACACGCAGA TCCGCGCCGC CTGGACCAAC TCGGTGGTGC GCCCGACCTT CGGCCAGCTG
GCGCCGGGCT TCGTCATCGA CGGCGACGAG GCCAGCTTCG GCAACCCGGA CCTCAAGCCG
CTGGAGTCGA GCAACTTCGA CCTCGGCATC GAGCGCTACC TGGGCCGCGC CGGGGTGGTC
TCGGCCTTCG CCTTCTACAA GGACATCGAC AACTTCGTCT ATGCCACGGA CCTGGCCGGC
AGCGGCGCCT GGGGCGATTT CAGCGAGGCC AACACCTTCG CCAACGGCAG TAGCGCCAAG
CTGTACGGCA TCGAGCTGGC CTATTCGCAG AAGTTCGACT GGCTGCCGGC ACCCTGGAAC
GGTCTGCTGC TGGGCGCCAA CGCCACCTTC AGCCGTTCCG ATGCACGCAT CGAAGGCCAG
GGCAGCAAGC GCAGCATCGA TCTGCCCAAC CAGTCCGACC GCGTCGGCAA CCTGACCCTG
GGCTGGGAGA ACGACAAGCT CAGCCTGCGT CTGGCGGCCA ATTACAAATC CAGGTACCTG
GCCGAAGTGG CGGCAGTGGA CGACAAGGCC CACGACCTCT ACGCCGATTC GCAGCTGTTC
GTCGATTTCA GCGCCGGCTA CTTCCTCAGC GACAACCTGC AGCTGAAGTT CGAGGCGCAG
AACCTCACCG ACGAGTCCTA CTACGTCTAC ACCGGCAGCC GTCGCTACAA CGCGCAGTAC
GAGGAATACG GCCCGACCTA CAGCCTCGGC CTGACCTTCA CCCACTTCTA A
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| Protein sequence | MRLGHSRTRH AGFRISTLAL AIAASAVALA EEPVVLEHVE VVGQAASIDK ALQDQRRSDS
VTSVVHADGI GQLPDDNAAE ALQRIPGLSV ERDQGEGRFV SVRGIGPDLN AVTINGTLVP
APESKRRAVA LDVLPAELVQ SLSVVKTLTP DMDANSLGGT VQVESLSAFD HDGLFYSLSS
EASYNDKSDQ TSPKFSGAIS ERFSLGDGID NFGVAAALSW QQRDFASDNL ETGSAWDFSD
GARLEELEQR AYDIRRERTG LGLNFDYKPD DESSYYLRTL YSRYKDTETR NAAGVEFADA
QLPGESGEAE GWRELKSREE TQQIQSYVFG GERNLGLWTV SGQLGYSKAS EKTPEGIAGA
TFEGNDDFAD VGFGGTRKPK LNVGSAFYDP ANFTLDEVEW EKQKTTDTEK NIKLDLARDY
EMSGYAAQAK FGGKLSRRKK DNDLEAWVYE DLGDFGLTDE QLNLGQFVKG EVDYGLGRFG
PGISAKAIER LLAGLNKADF YDEEESRIND FKMREDINAA YLMNSVDIDD WRFIAGVRYE
GTEFEAKGTG LRDDVYESID SRKRYDHWLP GLHARYQLDE HTQIRAAWTN SVVRPTFGQL
APGFVIDGDE ASFGNPDLKP LESSNFDLGI ERYLGRAGVV SAFAFYKDID NFVYATDLAG
SGAWGDFSEA NTFANGSSAK LYGIELAYSQ KFDWLPAPWN GLLLGANATF SRSDARIEGQ
GSKRSIDLPN QSDRVGNLTL GWENDKLSLR LAANYKSRYL AEVAAVDDKA HDLYADSQLF
VDFSAGYFLS DNLQLKFEAQ NLTDESYYVY TGSRRYNAQY EEYGPTYSLG LTFTHF
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