| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4059 |
|---|
| Symbol | |
|---|
| ID | 5106356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4442950 |
|---|
| End bp | 4444905 |
|---|
| Gene Length | 1956 bp |
|---|
| Protein Length | 651 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640505323 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001189538 |
|---|
| Protein GI | 146309073 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3211] Predicted phosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.507978 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCACG ATCCGCAGGA CTTTCACCAA CGCCTCGAAG CCCACGACGA CCAGTCGATC
AACCCCAGTG CCAACCCGCC GCTGGCGACG CTGATCGACC CCACCCGGCG CAACCTGCTC
AAGGGCGGCC TCGGCCTGGC CGCCCTGGGC TTCTTCGGTG GAGGCCTGGC CGCCTGCAGC
AAGGCCTCGG CCAGCCCGTT GCTGAACTTC ACCAGCGTGC CGCTGCAGTT CGATCCCCAG
TTCGACCAGG TGCTGGTGCC GCCGGGCTAC CGCGCCGTGC CGTTCTTCTC CTGGGGCGAT
GCGGTGGAGC CCGGCGCGCC GGACTGGCAC CCGGACGCCA GCGACGACTG GCAGGCCCAA
CTCAAACAGG CCGGCGACAA CCATGACGGC ATGAACTTCT TCGCCTTCGA AGGCGAGCAG
GATCGCGGCC TGCTGGTGAT GAACCACGAA TACGTCAACC CGCCGCTGCA TCCGTCCGGG
GTGATCGACC AGAGCCAACC GCGACCCCTG GACGAGGTGC GCAAGGAGCA GGCCGCCCAT
GGCGTCTCGG TGATCGAGGT GAGAAAAGGC TCGGACGGGC AGTGGCACAG AGTGATGGAT
TCGCCCTACA ACCGGCGCAT CAGCATGCTC ACGCCGATGC GCCTGGCCGG ACCGCTGGCC
GGGCTGGAGA TGATGAAGAC CGCCAGCGAC CCCGAAGGCC TGACGGTGCT CGGCACCCTG
AACAACTGCG CCACCGGCGT CACGCCCTGG GGCACCTTCC TTACCTGCGA GGAGAACTGG
CACAACTACT TCATCAATCG CGACCAACAG GATTATGAGC GCCGTGTGTC GCACAAGCGC
TATGGCCTGG CCAGCAGCGG CACCAGCAAG AACTACGCCT GGGAAACCGC CGACGCGCGC
TTCGACGCCA CGCCTTATGC CGACCAGCCC CACGGCGGTC ACGTCAACGA ACCGCATCGC
TTCGGCTGGG TGGTGGAGAT CGACCCCTTC GACCCTGGCG CGCAGCCGAT CAAGCGTACC
GCGTTCGGCC GCTTCAGTCG CGAGTGCGCG GCCCTGGCGC TCGGCGAGGA CGGGCGCATG
GCCTTCTATT CGGGCGACGA CGCCCGCGGC GAGTACGTCT ACAAGTTCGT CCCCAGCGGG
CGCTTCGACG CCGCCAATCC TCGCGCCAAC CGTGATCTGC TGGACGAAGG CACGCTGTAC
GCCGCGCGTT TCGATGCCGA CGGCAGCGGC CATTGGCTGG CCCTGGTGCA TGGGCAGAAC
GGCCTGAGCG CCGAGCACGG CTTCGCCAGC CAGGCCGAGG TGCTGCTCAA CGCCCGCGCC
GCCGCCGACC GTGCTGGCGC CACGCCCATG GATCGGCCCG AGTGGGCGGC GGTGCACCCC
AGAACGCGCG AGGTCTATGT CGCCCTGACC AACAACGATG GCCGTGGCGA CAAGCAGCCC
ACGGACGCCG CTAACCCGCG CCCACACAAC CTGCACGGGC AGATCCTGCG TTTCAACGAG
CAGGGCGGCG ACCCGACCGC CACCACCTTC ACCTGGGAGC TGTTCCTCCT GGCCGGTGAG
GCTAAGGGCG CGCGAACTGT TGAGGGTGGG CCGCTGCCGG CCAACCTCAC CGGCACCATC
GACGGTGACA TCTTCTCCTC GCCGGACGGC CTGGCCTTCG ACGCCGCCGG GCGCCTGTGG
ATCCAGACCG ATTACGACGA CGAAGAGGCG CCGATGCAGG GCATGGGCTG CAACATGATG
CTCTGCGCCG ACCCCGCCAC CCGCGAGGTG CGCCGCTTCA TGGTCGGCCC GCGCGGCTGC
GAGATCACCG GCCTGGCCTG GAGTCCGGAC GGCAAGGCGA TGTGGGCCAA TATCCAGCAC
CCGAGCCTCA GCTACCCGGC CAGCGACGGC CGCAGCCGCC CGCGCTCGAC CACCGTGCTG
GTGACCCGCC TCGACGGCGG AGTGATCGGC AGCTGA
|
|---|
| Protein sequence | MKHDPQDFHQ RLEAHDDQSI NPSANPPLAT LIDPTRRNLL KGGLGLAALG FFGGGLAACS
KASASPLLNF TSVPLQFDPQ FDQVLVPPGY RAVPFFSWGD AVEPGAPDWH PDASDDWQAQ
LKQAGDNHDG MNFFAFEGEQ DRGLLVMNHE YVNPPLHPSG VIDQSQPRPL DEVRKEQAAH
GVSVIEVRKG SDGQWHRVMD SPYNRRISML TPMRLAGPLA GLEMMKTASD PEGLTVLGTL
NNCATGVTPW GTFLTCEENW HNYFINRDQQ DYERRVSHKR YGLASSGTSK NYAWETADAR
FDATPYADQP HGGHVNEPHR FGWVVEIDPF DPGAQPIKRT AFGRFSRECA ALALGEDGRM
AFYSGDDARG EYVYKFVPSG RFDAANPRAN RDLLDEGTLY AARFDADGSG HWLALVHGQN
GLSAEHGFAS QAEVLLNARA AADRAGATPM DRPEWAAVHP RTREVYVALT NNDGRGDKQP
TDAANPRPHN LHGQILRFNE QGGDPTATTF TWELFLLAGE AKGARTVEGG PLPANLTGTI
DGDIFSSPDG LAFDAAGRLW IQTDYDDEEA PMQGMGCNMM LCADPATREV RRFMVGPRGC
EITGLAWSPD GKAMWANIQH PSLSYPASDG RSRPRSTTVL VTRLDGGVIG S
|
|---|
| |