Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4047 |
Symbol | |
ID | 5106344 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4428423 |
End bp | 4429883 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640505311 |
Product | sigma-54 dependent trancsriptional regulator |
Protein accession | YP_001189526 |
Protein GI | 146309061 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCATTT CCCGTGACGA TCTCGACCAG CACGGCCTGA TCATCGGCGT GTCGCCCGAG CGCTTTCGCG CCGTGGCCAT GCCGCTGCTG TTCGACCACC TCGACGCCCA GTGCGAGGGC ACCATCGCGG TCAATCGCCA GGCGCGCATC GTCTGGATCA ACGACAAGTA CGCGCAGAAG GTCGGCATCA GCGATCCGCG CAGTGCGCTG GGCAAGGAGG TCGAAGAGGT GCTGCCGGCC AGCCGCCTGC GCGAGGTGGT GGAAAGCGGC CAGCCGAGCA TGCTCGACCT GATGGCCTTC GGCGACGAGC ACTTCGTGGT CACCCGCATC CCCCTGCGCG ACGAGGACGG CACCCTGGTC GGCGCCCTCG GTTTCGTCCT GTTCGACCGC GCCCGTCATC TCAAGCCGCT GATGGCCAAG TACGCCAACC TGCAGACCCA GCTGCTCGCC ACCCAGCACG AGCTGGCCAA GGCGCGCCGT GCGCGCTACA CCATCGCCGG CTTCATCGGC GCCAGCGCGG CGGCCAGCGA AGTGAAGCGC CAGGCGCGCC GTGCCGCGCA GCTGGATGCC ACGGTGCTGA TCCGTGGCGA GACCGGCACC GGCAAGGAGC TGCTGGCCCA GGGCATTCAC AACCTGTCGC CACGGGCCAA CGGCCCCTTC GTTGCGGTCA ACGTCGCGGC GATCCCGGAA ACCCTGGTCG AAGCCGAGCT GTTCGGCACC GCGCCGGGCG CCTTCACCGG CGCCGAGCGC AAGGCGCGCA TCGGCAAGTT CGAGGTGGCC AACGGCGGCA CGCTGTTTCT CGACGAGATC GGCGACCTGC CGCTGCCGTT GCAGGCCAAG CTGCTGCGCG TGCTGCAGGA GCAGGAGGTG GAGCCGCTCG GCTCCAACCA GGTCAAGCCG CTCAACGTGC GGGTGATCGC CGCCACCCAT ATCGACCTGG AAGCCAAGGT GGCGGCCGGG CAGTTTCGCG ATGACCTGTA CTACCGGCTC AACGTGCTGG CCCTGCGCGT ACCGCCGCTG CGCGAACGCG CCAGCGACAT TCCCGCATTG ATCGAGCACC TGCTTGATGA CCTGGCCAAC CGCTCCGGCC TGGCGCCCAT GGAGCTGAGC GACGATGCCC TGGCCCTGCT CTGCGCACAA CCGTGGAAGG GCAATGTGCG CGAGCTGCGC AACCTGCTGG AACGGGCGCA GCTGGCGGTC GACGGGCGAC TGGATGGCGC GACGGTGCGC AGCCTGCTGA CCGATCCGGT GGCACCAAGT GCGCCGCTGC CCCTAGCGGC GCCGATGAGC GGCACCGCGC AAACGCTGGC CGAGCAGCTG GCGCAGGCCG AACGCCAGGC GCTGCTGGCG GCCCTGCAGG CCACCGACGG CAATCGCCAG CAGGCCGCCG AACGCCTGGG CATTTCCCGC GCCGGCTTCT ACGCCAAGCT GGCGCAGCAT GGGCTGGGGC GGCGCGATTA G
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Protein sequence | MAISRDDLDQ HGLIIGVSPE RFRAVAMPLL FDHLDAQCEG TIAVNRQARI VWINDKYAQK VGISDPRSAL GKEVEEVLPA SRLREVVESG QPSMLDLMAF GDEHFVVTRI PLRDEDGTLV GALGFVLFDR ARHLKPLMAK YANLQTQLLA TQHELAKARR ARYTIAGFIG ASAAASEVKR QARRAAQLDA TVLIRGETGT GKELLAQGIH NLSPRANGPF VAVNVAAIPE TLVEAELFGT APGAFTGAER KARIGKFEVA NGGTLFLDEI GDLPLPLQAK LLRVLQEQEV EPLGSNQVKP LNVRVIAATH IDLEAKVAAG QFRDDLYYRL NVLALRVPPL RERASDIPAL IEHLLDDLAN RSGLAPMELS DDALALLCAQ PWKGNVRELR NLLERAQLAV DGRLDGATVR SLLTDPVAPS APLPLAAPMS GTAQTLAEQL AQAERQALLA ALQATDGNRQ QAAERLGISR AGFYAKLAQH GLGRRD
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