Gene Pmen_4047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4047 
Symbol 
ID5106344 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4428423 
End bp4429883 
Gene Length1461 bp 
Protein Length486 aa 
Translation table11 
GC content70% 
IMG OID640505311 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_001189526 
Protein GI146309061 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCATTT CCCGTGACGA TCTCGACCAG CACGGCCTGA TCATCGGCGT GTCGCCCGAG 
CGCTTTCGCG CCGTGGCCAT GCCGCTGCTG TTCGACCACC TCGACGCCCA GTGCGAGGGC
ACCATCGCGG TCAATCGCCA GGCGCGCATC GTCTGGATCA ACGACAAGTA CGCGCAGAAG
GTCGGCATCA GCGATCCGCG CAGTGCGCTG GGCAAGGAGG TCGAAGAGGT GCTGCCGGCC
AGCCGCCTGC GCGAGGTGGT GGAAAGCGGC CAGCCGAGCA TGCTCGACCT GATGGCCTTC
GGCGACGAGC ACTTCGTGGT CACCCGCATC CCCCTGCGCG ACGAGGACGG CACCCTGGTC
GGCGCCCTCG GTTTCGTCCT GTTCGACCGC GCCCGTCATC TCAAGCCGCT GATGGCCAAG
TACGCCAACC TGCAGACCCA GCTGCTCGCC ACCCAGCACG AGCTGGCCAA GGCGCGCCGT
GCGCGCTACA CCATCGCCGG CTTCATCGGC GCCAGCGCGG CGGCCAGCGA AGTGAAGCGC
CAGGCGCGCC GTGCCGCGCA GCTGGATGCC ACGGTGCTGA TCCGTGGCGA GACCGGCACC
GGCAAGGAGC TGCTGGCCCA GGGCATTCAC AACCTGTCGC CACGGGCCAA CGGCCCCTTC
GTTGCGGTCA ACGTCGCGGC GATCCCGGAA ACCCTGGTCG AAGCCGAGCT GTTCGGCACC
GCGCCGGGCG CCTTCACCGG CGCCGAGCGC AAGGCGCGCA TCGGCAAGTT CGAGGTGGCC
AACGGCGGCA CGCTGTTTCT CGACGAGATC GGCGACCTGC CGCTGCCGTT GCAGGCCAAG
CTGCTGCGCG TGCTGCAGGA GCAGGAGGTG GAGCCGCTCG GCTCCAACCA GGTCAAGCCG
CTCAACGTGC GGGTGATCGC CGCCACCCAT ATCGACCTGG AAGCCAAGGT GGCGGCCGGG
CAGTTTCGCG ATGACCTGTA CTACCGGCTC AACGTGCTGG CCCTGCGCGT ACCGCCGCTG
CGCGAACGCG CCAGCGACAT TCCCGCATTG ATCGAGCACC TGCTTGATGA CCTGGCCAAC
CGCTCCGGCC TGGCGCCCAT GGAGCTGAGC GACGATGCCC TGGCCCTGCT CTGCGCACAA
CCGTGGAAGG GCAATGTGCG CGAGCTGCGC AACCTGCTGG AACGGGCGCA GCTGGCGGTC
GACGGGCGAC TGGATGGCGC GACGGTGCGC AGCCTGCTGA CCGATCCGGT GGCACCAAGT
GCGCCGCTGC CCCTAGCGGC GCCGATGAGC GGCACCGCGC AAACGCTGGC CGAGCAGCTG
GCGCAGGCCG AACGCCAGGC GCTGCTGGCG GCCCTGCAGG CCACCGACGG CAATCGCCAG
CAGGCCGCCG AACGCCTGGG CATTTCCCGC GCCGGCTTCT ACGCCAAGCT GGCGCAGCAT
GGGCTGGGGC GGCGCGATTA G
 
Protein sequence
MAISRDDLDQ HGLIIGVSPE RFRAVAMPLL FDHLDAQCEG TIAVNRQARI VWINDKYAQK 
VGISDPRSAL GKEVEEVLPA SRLREVVESG QPSMLDLMAF GDEHFVVTRI PLRDEDGTLV
GALGFVLFDR ARHLKPLMAK YANLQTQLLA TQHELAKARR ARYTIAGFIG ASAAASEVKR
QARRAAQLDA TVLIRGETGT GKELLAQGIH NLSPRANGPF VAVNVAAIPE TLVEAELFGT
APGAFTGAER KARIGKFEVA NGGTLFLDEI GDLPLPLQAK LLRVLQEQEV EPLGSNQVKP
LNVRVIAATH IDLEAKVAAG QFRDDLYYRL NVLALRVPPL RERASDIPAL IEHLLDDLAN
RSGLAPMELS DDALALLCAQ PWKGNVRELR NLLERAQLAV DGRLDGATVR SLLTDPVAPS
APLPLAAPMS GTAQTLAEQL AQAERQALLA ALQATDGNRQ QAAERLGISR AGFYAKLAQH
GLGRRD