Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4046 |
Symbol | |
ID | 5106343 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4427124 |
End bp | 4428125 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640505310 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_001189525 |
Protein GI | 146309060 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTCA AGCGACTCTT CTCCGCGCTC GCCGTCGGCG CTGCGCTGAC TGCCCTGTGT GCCACCGCGC AGGCGCGTGA ATACTCCGTT TCCACCGTGC TTTCCGACGC CTTCCCCTGG GGCCAGGCTG CGCAGAAATG GGCCGACCTG GTCAACGAGC GCTCCGCAGG GCGCATCACC CTGCGCGTGT ACCCCAATGC ACAACTGGTC GCCGGCGACC AGACCAAGGA ATTCTCCGCC ATGCGCTCGG GCCTGATCGA CATGGCCGTG GGCTCGACCA TCAACTGGTC GCCGCAGGTG CCGGAGCTCA ACCTGTTCTC CCTGCCGTTT CTGATGAAGA GCGATGCCGA CCTCGACGCC ATCACCCAGG GCGAAGCCGG CAAGCTGGCC TTCGCCGCCA TCGAGCAGCG CGGCATCGTG CCGCTGGCCT GGGGCGAGAA CGGTTTCCGC CAGCTGTCCA ACTCGGCCAG GCCGGTGCGC AGCCCGGCCG ACATGGCGGG CCTGAAGATC CGCGTGGTCG GCTCGCCACT GTTCCAGGAC ACCTTCACCG CGCTCGGCGC CAACCCCACG CAGATGAGCT GGGCCGACGC CAAGCCGGCC CTGACCACCG GCGCGGTGGA CGGCCAGGAA AACCCGCTGT CGGTCTTCGA CGTGGCGCGC GTCGACCAGG TCGGCCAGAA GTACCTGACC CTGTGGGACT ACATGGCCGA CCCGCTGGTG TTCGCCGTCA ACCAGCGCGT GTGGAAAGGC CTGCCCGAGG AAGATCGCGA ACTGCTGCGC CAGGCGGCCA TCGACGCCGG CAAGTGGGAG ATCGAGCTGT CGCGTGGCGC CCAGGCCCAG CGCCTGGCCG ATGTGCGTGA GCGCGGTGTG GACGTGATCG AGCTGAGCGA CGCCGAGCGC GCCGCCTTCG TCGAAGCCAC TGCCAGCGTG CAGGAGAAAT GGGCACCGCG CATCGGCGAC GCGCTGATGG ACGCCGCGCG CAAGGCCGTG GCCCAGCCCT GA
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Protein sequence | MKLKRLFSAL AVGAALTALC ATAQAREYSV STVLSDAFPW GQAAQKWADL VNERSAGRIT LRVYPNAQLV AGDQTKEFSA MRSGLIDMAV GSTINWSPQV PELNLFSLPF LMKSDADLDA ITQGEAGKLA FAAIEQRGIV PLAWGENGFR QLSNSARPVR SPADMAGLKI RVVGSPLFQD TFTALGANPT QMSWADAKPA LTTGAVDGQE NPLSVFDVAR VDQVGQKYLT LWDYMADPLV FAVNQRVWKG LPEEDRELLR QAAIDAGKWE IELSRGAQAQ RLADVRERGV DVIELSDAER AAFVEATASV QEKWAPRIGD ALMDAARKAV AQP
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