| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4029 |
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| Symbol | |
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| ID | 5106326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4406940 |
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| End bp | 4410674 |
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| Gene Length | 3735 bp |
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| Protein Length | 1244 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640505292 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001189508 |
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| Protein GI | 146309043 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCGCT TGCCGGCCAT TCTGTTGTTG TGCCTGGCGT ACTGGACGAC CCCGGCCCTT
GCCCTGACTC TCAGCGAGGA GGAACGCACC TGGCTGGCCG CCCAGGCGGA GCTGCGCCTA
GGTGTGGATA CCTCCTGGCC TCCGTTCGAG TTTCGTGACG ATCAGGGCCG CTACCAGGGC
CTGACCGCCG ACTACGTCAG GCTGATCGAA AGCCGCCTCG GCCTGAAGCT GCAGCCTGTC
GAGCCGAGCA GCTGGAGCGA GGTGCTGGAC CAGGCCCGAG CCGGCCAGAT ACATCTGCTA
CCGGGCGTGA TGTCGACGCC CGAGCGCCAG GACTACCTGG TCTTCACGCG ACCCTACCTG
GACTTCCCCA TCGTCATCCT GGCCCGCAAC GGCGGGCCGC AGCCCAGAAA GCTCAGAGAC
CTCTATGGCC TGAAGGTCGC CGTGGTGGCC GACTACGCCC CGCACGAGCT GCTGCGCCAG
CAGCACCCGG ACCTCAGCCT GATGCCACTG CCCAGCGTCG CCGCGGCGCT GCAGGCGCTG
GCCACCGGCC AGGCGGATGC GCTGGTCGGC GATCTGGCAT CCAGCGTCTG GAGCCTGCGC
CAGCTCAAGC TCGACGGCCT GTACATCAGC GGTGAAACGC CCTATCGCTA CCAGCTGGCG
ATGGCCGCGC CGCGCAATCA CGCGATACTG GCCGGCATCC TCGACAAGCT GTTCGCCGAG
CTCAGCCCCG CTGAAGTCGC GGCGCTGCAG ACGCCCTGGA TCGGCAGCGT GCTGGACAAG
CGCAGCGCCT GGCGCGAAGC CCTGCCCTAC GGCCTGCCTG CGCTGCTCGG CCTGCTGGCG
ATCATCGCCA TCATCCTGCG CATCAATCGC CGCCTTAACA GCGAGATGCG CAATCGCGAA
GCGCTGGAGC AGGAACTGCG CAGCCGCGAG CAGCATTTTC GCGATATGGT GGAAAGCCTC
TCGGCCATCA CCTGGGAAGC GGAGTCCAGC GGGCTGACCT ACACCTACGT TTCGCCCCAC
GCCGAGAAGC TGCTCGGTTA CCCCCTGGAA GACTGGCTCC AGCCCGGCTT CTGGCAACGC
CACCTGCATC CGGACGATCA ACAGCGCGCC CTGCGCCGCT GCCTGGAGCA ATGCGCCGCC
GGTGAGGATC ACGCGCTGGA ATATCGCCTG CTGGCGGCCG ACGGTCATGT GGTCTGGGTG
CGCGACATCG TCACCCTGCT GCAGCGCGGC GATCAGCAGG TGGTCCGCGG CCTGATGATC
GACATCAGCG AGGCCAAGCA GACCGAACAT GCCCTGCGCC TGTCGGAGCA GAAGTTCGCC
TCGGTGTTCC AACAGTGCCC GGACATTCTG GTCATCGCCC GCCGCACCGA TGGCGTGCTG
CTCGAGGTCA ACGCCGCCTT CACCGAGCAG ACCGGCGTCA GCGTCGAGCA GGCCCTGGGC
AAGACCGCCA CCGAGCTGGA TATCTGGGGC GTTCCCGGCA TCGGCCCGAA CCTGCTGCTG
CGCCTGCAGG ACCAGAACCT GCGCAACCTG GAGATGCCCT TTCGCCGCGC CGACGGCAGC
CTGTTCACCG GCCTGATATC GGCCGAAGCC TTCCAGCTCG ACGACGTGCC GGCGCTGGTG
GTGGTGGTGC GCGACATCAG CCAGCTCAAG GCCACCCAGC AGCAGCTGCA GATCTCCGAG
GAAAAGTTCG CCAGAGCATT CCACGCCTCG CCCGACGGCC TGCTGATCAG CCGGATGCGC
GATGGCTTGC TGATCGAGGC CAACGACGGC TTCACCCGCA TCACCGGCTA CCAGCTCGAC
GAAGTGGCCA ACCAGAGCAC CCTTAGCCTG GGCATCTGGG CCGACCCACA GGATCGTCAG
CGCCTGGTCG AGCGGATTCG CCAGCACGGC AGCGTACGCG ACATGATCGC CCGGGTTCGC
ACCAAGAGCG GCCAGCTGCG CCTCTGCGAA CTGTCGGCGC AGCCGCTGCC CGTCGGTGGC
GAGGACTGCC TGCTGACCAT CGCCCGCGAC ATCACCGAAC GCCAGCAGAT GCAGGAAGAA
CTGCAGCAGG CCGCCACGGT GTTCGAAAGC ACCGCCGAAG GCGTGATGAT CACCGACCTC
GAACAACGCA TCACCGCGGT CAACCGCGCC TTCACCGAAA TCACCGGCTA TGCCGAGGCC
GAAGCCCTTG GCCAGCGCCC CAGCCTGCTC GCCTCCGGCC AGCATGACCA GGCCTTCTAC
AACGCCATGT GGCACTGCCT GGCGACCAAC GGCCACTGGC AGGGCGAGAT CTGGAACCGG
CGCAAGAACG GCGAGCTCTA CCCCGAGTGG CTGACCATCA GCGCGGTGCG CAACGCCGAC
AACCAGATCA CCCATTTCGT CGGCGTGTTC GCCGACATCT CCAGCCTCAA GCATGCCCAG
GCCCGCCTCG ACCATCAGGC CCACCACGAC CCGCTGACCG GCCTGCCCAA TCGCCTGTTG
TTCGAGAACC GCCTGCGCAG CGCGCTGGAC GGCTCACGCG CGGAAGACCG CGCCGGCGCC
GTGCTGTTTC TCGACCTCGA CCGCTTCAAG CAGATCAACG ACAGCCTCGG CCACCCGGTT
GGCGACCAGC TGCTCAGGGC CATCGCCGCG CGCCTGAAAC TGCAGCTGCG CGACATCGAC
ACCGTCGCCC GCCTCGGTGG CGATGAATTC ATCATCCTGC TGCCGGGCCT GCAGCAGGCA
GAGGACGCCG ATCAGGTCGC GCAGAAGCTG CTCGACTGCT TCACCGCCCC CTTCGATATC
GATCACCACG AGTTCTTCGT CAGCGCCAGC ATCGGCATCA GCCTCTACCC CAAGGACGGC
GCGGATGTCG CCACTCTGGT CAAGAATGCC GATGCCGCCA TGTACCAATC CAAGGCCAAG
GGGCGCAACC GCAGCGAGTT CTATACGCGC TCGCTGACCT TCCAGGTCAA CGAACGCATG
GCCATGGAAC AGGAACTGCG CCGCGCCCTG GAACGCGACG AACTGTGCCT CTACTACCAG
CCCAAGTTCT GCCTGCGCAG CCAGCGACTG GTCGGCGCCG AAGCGCTGGT GCGCTGGCCG
CACCCGGTAT TCGGCGACAT CCCGCCGGAT CGCTTCATCC CGGTGGCTGA AGAAAGCGGG
CTGATCCTGC CACTCGGCGA CTGGGTGCTG CAGGAGGCCT GCCGCCAGCT GCAATGCTGG
CAGGAGAACA ACCAGGGCTT CGGCACATTG TCGGTCAACC TCGCTGGCGC CCAGCTGCAC
CAGCCGAGCC TGGTTTCGCG CATCGGCGAA CTGCTGCAAC AGCACGGTCT GGCGGCCGGG
CTGCTGCAAC TGGAGATCAC CGAGAACTTC ATCATGAACC AGGCCGGCGA TGCCCTGGAC
ATTCTGCACA GGCTCAAGGA GCTGGGTGTG CAGCTGGCCA TCGACGACTT CGGCACCGGC
TATTCCTCGC TCAGCTACCT CAAGCGCCTG CCGCTGGACG TGCTGAAGAT CGACCAGTCC
TTCGTCCGCG GCCTGCCGGA CGACCCGCAC GACCTGGCAA TCACCCGCGC CATCATCGCC
CTGGGTCAGA GCATGCAACT GACGGTGATC GCCGAAGGGG TGGAAACCAA GGCCCAGGAA
CTCTGCCTGG CCGCCGAAGG CTGCCTGCAG ATCCAGGGCT ACGTGATCAG CCGCCCACTC
TCGGCAGAAG CCTTCACCCG GAAATTTCTC CCGCCAGGTC AAGCGGTTGG CGCTGGCGAG
AACGCGTCGG TATAA
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| Protein sequence | MPRLPAILLL CLAYWTTPAL ALTLSEEERT WLAAQAELRL GVDTSWPPFE FRDDQGRYQG
LTADYVRLIE SRLGLKLQPV EPSSWSEVLD QARAGQIHLL PGVMSTPERQ DYLVFTRPYL
DFPIVILARN GGPQPRKLRD LYGLKVAVVA DYAPHELLRQ QHPDLSLMPL PSVAAALQAL
ATGQADALVG DLASSVWSLR QLKLDGLYIS GETPYRYQLA MAAPRNHAIL AGILDKLFAE
LSPAEVAALQ TPWIGSVLDK RSAWREALPY GLPALLGLLA IIAIILRINR RLNSEMRNRE
ALEQELRSRE QHFRDMVESL SAITWEAESS GLTYTYVSPH AEKLLGYPLE DWLQPGFWQR
HLHPDDQQRA LRRCLEQCAA GEDHALEYRL LAADGHVVWV RDIVTLLQRG DQQVVRGLMI
DISEAKQTEH ALRLSEQKFA SVFQQCPDIL VIARRTDGVL LEVNAAFTEQ TGVSVEQALG
KTATELDIWG VPGIGPNLLL RLQDQNLRNL EMPFRRADGS LFTGLISAEA FQLDDVPALV
VVVRDISQLK ATQQQLQISE EKFARAFHAS PDGLLISRMR DGLLIEANDG FTRITGYQLD
EVANQSTLSL GIWADPQDRQ RLVERIRQHG SVRDMIARVR TKSGQLRLCE LSAQPLPVGG
EDCLLTIARD ITERQQMQEE LQQAATVFES TAEGVMITDL EQRITAVNRA FTEITGYAEA
EALGQRPSLL ASGQHDQAFY NAMWHCLATN GHWQGEIWNR RKNGELYPEW LTISAVRNAD
NQITHFVGVF ADISSLKHAQ ARLDHQAHHD PLTGLPNRLL FENRLRSALD GSRAEDRAGA
VLFLDLDRFK QINDSLGHPV GDQLLRAIAA RLKLQLRDID TVARLGGDEF IILLPGLQQA
EDADQVAQKL LDCFTAPFDI DHHEFFVSAS IGISLYPKDG ADVATLVKNA DAAMYQSKAK
GRNRSEFYTR SLTFQVNERM AMEQELRRAL ERDELCLYYQ PKFCLRSQRL VGAEALVRWP
HPVFGDIPPD RFIPVAEESG LILPLGDWVL QEACRQLQCW QENNQGFGTL SVNLAGAQLH
QPSLVSRIGE LLQQHGLAAG LLQLEITENF IMNQAGDALD ILHRLKELGV QLAIDDFGTG
YSSLSYLKRL PLDVLKIDQS FVRGLPDDPH DLAITRAIIA LGQSMQLTVI AEGVETKAQE
LCLAAEGCLQ IQGYVISRPL SAEAFTRKFL PPGQAVGAGE NASV
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