Gene Pmen_4029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4029 
Symbol 
ID5106326 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4406940 
End bp4410674 
Gene Length3735 bp 
Protein Length1244 aa 
Translation table11 
GC content66% 
IMG OID640505292 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_001189508 
Protein GI146309043 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCGCT TGCCGGCCAT TCTGTTGTTG TGCCTGGCGT ACTGGACGAC CCCGGCCCTT 
GCCCTGACTC TCAGCGAGGA GGAACGCACC TGGCTGGCCG CCCAGGCGGA GCTGCGCCTA
GGTGTGGATA CCTCCTGGCC TCCGTTCGAG TTTCGTGACG ATCAGGGCCG CTACCAGGGC
CTGACCGCCG ACTACGTCAG GCTGATCGAA AGCCGCCTCG GCCTGAAGCT GCAGCCTGTC
GAGCCGAGCA GCTGGAGCGA GGTGCTGGAC CAGGCCCGAG CCGGCCAGAT ACATCTGCTA
CCGGGCGTGA TGTCGACGCC CGAGCGCCAG GACTACCTGG TCTTCACGCG ACCCTACCTG
GACTTCCCCA TCGTCATCCT GGCCCGCAAC GGCGGGCCGC AGCCCAGAAA GCTCAGAGAC
CTCTATGGCC TGAAGGTCGC CGTGGTGGCC GACTACGCCC CGCACGAGCT GCTGCGCCAG
CAGCACCCGG ACCTCAGCCT GATGCCACTG CCCAGCGTCG CCGCGGCGCT GCAGGCGCTG
GCCACCGGCC AGGCGGATGC GCTGGTCGGC GATCTGGCAT CCAGCGTCTG GAGCCTGCGC
CAGCTCAAGC TCGACGGCCT GTACATCAGC GGTGAAACGC CCTATCGCTA CCAGCTGGCG
ATGGCCGCGC CGCGCAATCA CGCGATACTG GCCGGCATCC TCGACAAGCT GTTCGCCGAG
CTCAGCCCCG CTGAAGTCGC GGCGCTGCAG ACGCCCTGGA TCGGCAGCGT GCTGGACAAG
CGCAGCGCCT GGCGCGAAGC CCTGCCCTAC GGCCTGCCTG CGCTGCTCGG CCTGCTGGCG
ATCATCGCCA TCATCCTGCG CATCAATCGC CGCCTTAACA GCGAGATGCG CAATCGCGAA
GCGCTGGAGC AGGAACTGCG CAGCCGCGAG CAGCATTTTC GCGATATGGT GGAAAGCCTC
TCGGCCATCA CCTGGGAAGC GGAGTCCAGC GGGCTGACCT ACACCTACGT TTCGCCCCAC
GCCGAGAAGC TGCTCGGTTA CCCCCTGGAA GACTGGCTCC AGCCCGGCTT CTGGCAACGC
CACCTGCATC CGGACGATCA ACAGCGCGCC CTGCGCCGCT GCCTGGAGCA ATGCGCCGCC
GGTGAGGATC ACGCGCTGGA ATATCGCCTG CTGGCGGCCG ACGGTCATGT GGTCTGGGTG
CGCGACATCG TCACCCTGCT GCAGCGCGGC GATCAGCAGG TGGTCCGCGG CCTGATGATC
GACATCAGCG AGGCCAAGCA GACCGAACAT GCCCTGCGCC TGTCGGAGCA GAAGTTCGCC
TCGGTGTTCC AACAGTGCCC GGACATTCTG GTCATCGCCC GCCGCACCGA TGGCGTGCTG
CTCGAGGTCA ACGCCGCCTT CACCGAGCAG ACCGGCGTCA GCGTCGAGCA GGCCCTGGGC
AAGACCGCCA CCGAGCTGGA TATCTGGGGC GTTCCCGGCA TCGGCCCGAA CCTGCTGCTG
CGCCTGCAGG ACCAGAACCT GCGCAACCTG GAGATGCCCT TTCGCCGCGC CGACGGCAGC
CTGTTCACCG GCCTGATATC GGCCGAAGCC TTCCAGCTCG ACGACGTGCC GGCGCTGGTG
GTGGTGGTGC GCGACATCAG CCAGCTCAAG GCCACCCAGC AGCAGCTGCA GATCTCCGAG
GAAAAGTTCG CCAGAGCATT CCACGCCTCG CCCGACGGCC TGCTGATCAG CCGGATGCGC
GATGGCTTGC TGATCGAGGC CAACGACGGC TTCACCCGCA TCACCGGCTA CCAGCTCGAC
GAAGTGGCCA ACCAGAGCAC CCTTAGCCTG GGCATCTGGG CCGACCCACA GGATCGTCAG
CGCCTGGTCG AGCGGATTCG CCAGCACGGC AGCGTACGCG ACATGATCGC CCGGGTTCGC
ACCAAGAGCG GCCAGCTGCG CCTCTGCGAA CTGTCGGCGC AGCCGCTGCC CGTCGGTGGC
GAGGACTGCC TGCTGACCAT CGCCCGCGAC ATCACCGAAC GCCAGCAGAT GCAGGAAGAA
CTGCAGCAGG CCGCCACGGT GTTCGAAAGC ACCGCCGAAG GCGTGATGAT CACCGACCTC
GAACAACGCA TCACCGCGGT CAACCGCGCC TTCACCGAAA TCACCGGCTA TGCCGAGGCC
GAAGCCCTTG GCCAGCGCCC CAGCCTGCTC GCCTCCGGCC AGCATGACCA GGCCTTCTAC
AACGCCATGT GGCACTGCCT GGCGACCAAC GGCCACTGGC AGGGCGAGAT CTGGAACCGG
CGCAAGAACG GCGAGCTCTA CCCCGAGTGG CTGACCATCA GCGCGGTGCG CAACGCCGAC
AACCAGATCA CCCATTTCGT CGGCGTGTTC GCCGACATCT CCAGCCTCAA GCATGCCCAG
GCCCGCCTCG ACCATCAGGC CCACCACGAC CCGCTGACCG GCCTGCCCAA TCGCCTGTTG
TTCGAGAACC GCCTGCGCAG CGCGCTGGAC GGCTCACGCG CGGAAGACCG CGCCGGCGCC
GTGCTGTTTC TCGACCTCGA CCGCTTCAAG CAGATCAACG ACAGCCTCGG CCACCCGGTT
GGCGACCAGC TGCTCAGGGC CATCGCCGCG CGCCTGAAAC TGCAGCTGCG CGACATCGAC
ACCGTCGCCC GCCTCGGTGG CGATGAATTC ATCATCCTGC TGCCGGGCCT GCAGCAGGCA
GAGGACGCCG ATCAGGTCGC GCAGAAGCTG CTCGACTGCT TCACCGCCCC CTTCGATATC
GATCACCACG AGTTCTTCGT CAGCGCCAGC ATCGGCATCA GCCTCTACCC CAAGGACGGC
GCGGATGTCG CCACTCTGGT CAAGAATGCC GATGCCGCCA TGTACCAATC CAAGGCCAAG
GGGCGCAACC GCAGCGAGTT CTATACGCGC TCGCTGACCT TCCAGGTCAA CGAACGCATG
GCCATGGAAC AGGAACTGCG CCGCGCCCTG GAACGCGACG AACTGTGCCT CTACTACCAG
CCCAAGTTCT GCCTGCGCAG CCAGCGACTG GTCGGCGCCG AAGCGCTGGT GCGCTGGCCG
CACCCGGTAT TCGGCGACAT CCCGCCGGAT CGCTTCATCC CGGTGGCTGA AGAAAGCGGG
CTGATCCTGC CACTCGGCGA CTGGGTGCTG CAGGAGGCCT GCCGCCAGCT GCAATGCTGG
CAGGAGAACA ACCAGGGCTT CGGCACATTG TCGGTCAACC TCGCTGGCGC CCAGCTGCAC
CAGCCGAGCC TGGTTTCGCG CATCGGCGAA CTGCTGCAAC AGCACGGTCT GGCGGCCGGG
CTGCTGCAAC TGGAGATCAC CGAGAACTTC ATCATGAACC AGGCCGGCGA TGCCCTGGAC
ATTCTGCACA GGCTCAAGGA GCTGGGTGTG CAGCTGGCCA TCGACGACTT CGGCACCGGC
TATTCCTCGC TCAGCTACCT CAAGCGCCTG CCGCTGGACG TGCTGAAGAT CGACCAGTCC
TTCGTCCGCG GCCTGCCGGA CGACCCGCAC GACCTGGCAA TCACCCGCGC CATCATCGCC
CTGGGTCAGA GCATGCAACT GACGGTGATC GCCGAAGGGG TGGAAACCAA GGCCCAGGAA
CTCTGCCTGG CCGCCGAAGG CTGCCTGCAG ATCCAGGGCT ACGTGATCAG CCGCCCACTC
TCGGCAGAAG CCTTCACCCG GAAATTTCTC CCGCCAGGTC AAGCGGTTGG CGCTGGCGAG
AACGCGTCGG TATAA
 
Protein sequence
MPRLPAILLL CLAYWTTPAL ALTLSEEERT WLAAQAELRL GVDTSWPPFE FRDDQGRYQG 
LTADYVRLIE SRLGLKLQPV EPSSWSEVLD QARAGQIHLL PGVMSTPERQ DYLVFTRPYL
DFPIVILARN GGPQPRKLRD LYGLKVAVVA DYAPHELLRQ QHPDLSLMPL PSVAAALQAL
ATGQADALVG DLASSVWSLR QLKLDGLYIS GETPYRYQLA MAAPRNHAIL AGILDKLFAE
LSPAEVAALQ TPWIGSVLDK RSAWREALPY GLPALLGLLA IIAIILRINR RLNSEMRNRE
ALEQELRSRE QHFRDMVESL SAITWEAESS GLTYTYVSPH AEKLLGYPLE DWLQPGFWQR
HLHPDDQQRA LRRCLEQCAA GEDHALEYRL LAADGHVVWV RDIVTLLQRG DQQVVRGLMI
DISEAKQTEH ALRLSEQKFA SVFQQCPDIL VIARRTDGVL LEVNAAFTEQ TGVSVEQALG
KTATELDIWG VPGIGPNLLL RLQDQNLRNL EMPFRRADGS LFTGLISAEA FQLDDVPALV
VVVRDISQLK ATQQQLQISE EKFARAFHAS PDGLLISRMR DGLLIEANDG FTRITGYQLD
EVANQSTLSL GIWADPQDRQ RLVERIRQHG SVRDMIARVR TKSGQLRLCE LSAQPLPVGG
EDCLLTIARD ITERQQMQEE LQQAATVFES TAEGVMITDL EQRITAVNRA FTEITGYAEA
EALGQRPSLL ASGQHDQAFY NAMWHCLATN GHWQGEIWNR RKNGELYPEW LTISAVRNAD
NQITHFVGVF ADISSLKHAQ ARLDHQAHHD PLTGLPNRLL FENRLRSALD GSRAEDRAGA
VLFLDLDRFK QINDSLGHPV GDQLLRAIAA RLKLQLRDID TVARLGGDEF IILLPGLQQA
EDADQVAQKL LDCFTAPFDI DHHEFFVSAS IGISLYPKDG ADVATLVKNA DAAMYQSKAK
GRNRSEFYTR SLTFQVNERM AMEQELRRAL ERDELCLYYQ PKFCLRSQRL VGAEALVRWP
HPVFGDIPPD RFIPVAEESG LILPLGDWVL QEACRQLQCW QENNQGFGTL SVNLAGAQLH
QPSLVSRIGE LLQQHGLAAG LLQLEITENF IMNQAGDALD ILHRLKELGV QLAIDDFGTG
YSSLSYLKRL PLDVLKIDQS FVRGLPDDPH DLAITRAIIA LGQSMQLTVI AEGVETKAQE
LCLAAEGCLQ IQGYVISRPL SAEAFTRKFL PPGQAVGAGE NASV