| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4028 |
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| Symbol | |
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| ID | 5106325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4404942 |
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| End bp | 4406789 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640505291 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001189507 |
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| Protein GI | 146309042 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.8019 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGTAA AAGCGCAACA GCAATCTCGT TTGAAAGAAT TGATCAGCCG TGGTCGCGAG
CAGGGTTACC TGACGTACGC GGAGGTCAAT GACCACCTGC CGGAAGACAT TTCCGATCCG
GAACAGGTGG AAGACATCAT CCGCATGATC AACGACATGG GGATCAACGT ATTCGAGAGT
GCTCCGGATG CGGACGCCCT GTTGTTGGCC GAAGCCGACA CCGACGAGGC TGCAGCCGAA
GAAGCCGCTG CCGCCCTCGC CGCCGTTGAG ACCGATATCG GCCGCACCAC CGACCCGGTG
CGCATGTACA TGCGTGAAAT GGGCACCGTG GAACTGCTGA CCCGCGAAGG CGAGATCGAA
ATCGCCAAGC GCATCGAGGA AGGCATCCGC GAAGTCATGA GCGCCATCGC TCACTTCCCC
GGCACCGTCG AAGGCATCCT CGCCGAGTAC AACCGTGTCA CCACCGAGGG CGGCCGCCTG
GCCGAAGTCC TCAGTGGCTA CATCGACCCG GATGACGGCA GCGTGCCCGA CGAAGCCGCC
GCCCCCGTTC CCGTCAAGGA AGGCGCCGCC GCTGAAGAGA GCGACGACGA AGAAGACGAA
GAGAGCGGCG ACGACGAGGA AGAAGAAGGC GATGGCGGCC CGGACCCGGA AGAAGCGGCT
CGCCGTTTCA GCGCCGTGGC CGAGCAGCAG GAGAAAGTCC AGAAGGCCCT GAAGAAGCAC
GGTCGTGGCA GCAAGCAGGC CACCGAAGAG CTGGCCGCCC TGGCCGAGCT GTTCATGCCG
ATCAAGCTGG TGCCCAAGCA GTACGACGCC CTGGTCACCC AGGTGCGCGA CGCTCTCGAC
CGTCTGCGTG CGCAAGAGCG CGCCATCATG CAGCTGTGCG TACGCGATGC GCGCATGCCG
CGTGCCGACT TCCTGCGCCT GTTCCCGGGC AACGAAATCG ACATGGACTG GGCCGCCGAC
CTGGCCAAGG GCAAGGCCAA GTACGCCGAA GCCCTGGGCA ACCTGCAGGG CGACATCCAG
CGCTGCCAGC AGAAGCTGGC CGACCTGGAA GCCGAGTGCA GCCTGAGCCT GGCCGAGATC
AAGGACATCA ACCGTCGCAT GTCCATCGGT GAGGCGAAAG CTCGCCGCGC CAAGAAGGAA
ATGGTCGAGG CCAACCTGCG TCTGGTGATC TCCATCGCCA AGAAGTACAC CAACCGCGGC
CTGCAGTTCC TCGACCTGAT CCAGGAAGGC AACATCGGCC TGATGAAGGC GGTGGACAAG
TTCGAATACC GGCGCGGCTA CAAGTTCTCG ACCTACGCCA CCTGGTGGAT TCGCCAGGCG
ATCACCCGCT CGATCGCCGA CCAGGCGCGC ACCATCCGTA TTCCGGTGCA CATGATCGAG
ACCATCAACA AGCTCAACCG CATCTCCCGT CAGATGCTGC AGGAAATGGG TCGCGAGCCC
ACTCCGGAAG AGCTGGGTGA GCGCATGGAA ATGCCCGAGG ACAAGATCCG CAAGGTATTG
AAGATCGCCA AAGAGCCGAT CTCCATGGAA ACCCCGATTG GCGACGACGA AGATTCGCAT
CTGGGCGACT TCATCGAGGA CAGCACCATG CAGTCCCCGA TCGACGTGGC CACCGTCGAA
AGCCTCAAGG AAGCCACTCG CGAAGTGCTG GCCGGCCTCA CCGCCCGTGA AGCCAAGGTC
CTGCGCATGC GCTTCGGTAT CGACATGAAC ACCGACCACA CCCTCGAGGA AGTGGGCAAG
CAGTTCGATG TCACCCGTGA GCGTATTCGT CAGATCGAAG CCAAGGCGCT GCGCAAGCTG
CGTCACCCGA CGCGAAGCGA GCACCTGCGC TCCTTCCTCG ACGAGTAA
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| Protein sequence | MSVKAQQQSR LKELISRGRE QGYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGINVFES
APDADALLLA EADTDEAAAE EAAAALAAVE TDIGRTTDPV RMYMREMGTV ELLTREGEIE
IAKRIEEGIR EVMSAIAHFP GTVEGILAEY NRVTTEGGRL AEVLSGYIDP DDGSVPDEAA
APVPVKEGAA AEESDDEEDE ESGDDEEEEG DGGPDPEEAA RRFSAVAEQQ EKVQKALKKH
GRGSKQATEE LAALAELFMP IKLVPKQYDA LVTQVRDALD RLRAQERAIM QLCVRDARMP
RADFLRLFPG NEIDMDWAAD LAKGKAKYAE ALGNLQGDIQ RCQQKLADLE AECSLSLAEI
KDINRRMSIG EAKARRAKKE MVEANLRLVI SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK
FEYRRGYKFS TYATWWIRQA ITRSIADQAR TIRIPVHMIE TINKLNRISR QMLQEMGREP
TPEELGERME MPEDKIRKVL KIAKEPISME TPIGDDEDSH LGDFIEDSTM QSPIDVATVE
SLKEATREVL AGLTAREAKV LRMRFGIDMN TDHTLEEVGK QFDVTRERIR QIEAKALRKL
RHPTRSEHLR SFLDE
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