Gene Pmen_4018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4018 
Symbol 
ID5106315 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4394851 
End bp4396122 
Gene Length1272 bp 
Protein Length423 aa 
Translation table11 
GC content61% 
IMG OID640505281 
Producthypothetical protein 
Protein accessionYP_001189497 
Protein GI146309032 
COG category[S] Function unknown 
COG ID[COG2718] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTATG TGATCGACCG GCGCCTGAAT GGCAAGAACA AGAGCACGGT AAACCGCCAG 
CGCTTCCTGC GGCGCTACCG CGAACATATC AAGAAGGCGG TGGAGGAAGC CGTCAGCCGG
CGCTCCATCA CCGACATGGA GCACGGCGAA CAGATCAGCA TTCCCGGCCG CGACATCGAC
GAGCCGGTGC TGCACCACGG CCGCGGCGGC AAGCAGACCA TCGTCCATCC CGGCAACAAG
GAGTTCACCG CCGGCGAACG CATCCCCAGG CCACAGGGTG GTGGCGGTGG GCGCGGCAGT
GGCAAGGCGA GCAACTCCGG CGAGGGCATG GACGAGTTCG TCTTCCAGAT CACTCAGGAA
GAATTCCTCG ACTTCATGTT CGAAGACCTG GAGCTGCCCA ACCTGGTCAA ACGCCACCTG
ACCGGCGCAG ATACCTTCAA GACCGTGCGC GCGGGCATCA GCAACGAAGG CAATCCGTCA
CGCATCAACA TCATCCGCAC GCTGCGCTCG GCCCATGCAC GGCGTATCGC CCTGTCCGGC
TCCAGCCGCG CCAAACTGCG CGAGGCGAAG GCCGAACTGC TGCGCCTTAG AACGGAAGAA
CCGGACAACT TCAGCGATAT TCAGGAAATC GAAGCGGAAA TCGAGCGTTT GAGCGCGCGC
ATCCACCGCG TGCCCTTTCT CGATACCTTC GACCTCAAGT ACAACCTGCT GACCAAGCAG
CCCAACCCCA GCTCCAAGGC GGTGATGTTC TGCCTGATGG ACGTGTCCGG CTCCATGACC
CAGGCCACCA AGGACATCGC CAAGCGCTTC TTCATCCTGC TTTACCTGTT CCTCAAGCGG
AACTACGACA AGATCGAGGT GGTGTTCATC CGCCACCACA CCAGTGCGAA AGAGGTGGAC
GAAGAGGAGT TCTTCTACTC CCGCGAGACC GGCGGCACCA TCGTCTCCAG CGCCCTGAAG
CTGATGCAGG AGATCATGGC CGAGCGTTAC CCGATCAACG AATGGAACAT CTATGCCGCC
CAGGCGTCGG ACGGCGATAA CTGGAACGAT GACTCGCCGG TGTGTCGGGA TATATTGATC
AACCAGATCA TGCCGTTCGT GCAGTACTTC ACCTACGTCG AGATCACCCC GCGCGAACAC
CAGGCGCTGT GGTTCGAGTA CGAGCAGGTG GCCGAAGCCT TCGACGAAAG CTTTGCCCAG
CAGCAACTGG TGTCCGCGGC GGACATCTAC CCGGTGTTCC GCGAACTGTT CCAGCGTCGC
CTGGTGAGTT GA
 
Protein sequence
MSYVIDRRLN GKNKSTVNRQ RFLRRYREHI KKAVEEAVSR RSITDMEHGE QISIPGRDID 
EPVLHHGRGG KQTIVHPGNK EFTAGERIPR PQGGGGGRGS GKASNSGEGM DEFVFQITQE
EFLDFMFEDL ELPNLVKRHL TGADTFKTVR AGISNEGNPS RINIIRTLRS AHARRIALSG
SSRAKLREAK AELLRLRTEE PDNFSDIQEI EAEIERLSAR IHRVPFLDTF DLKYNLLTKQ
PNPSSKAVMF CLMDVSGSMT QATKDIAKRF FILLYLFLKR NYDKIEVVFI RHHTSAKEVD
EEEFFYSRET GGTIVSSALK LMQEIMAERY PINEWNIYAA QASDGDNWND DSPVCRDILI
NQIMPFVQYF TYVEITPREH QALWFEYEQV AEAFDESFAQ QQLVSAADIY PVFRELFQRR
LVS