| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4017 |
|---|
| Symbol | |
|---|
| ID | 5106314 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4392854 |
|---|
| End bp | 4394776 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640505280 |
|---|
| Product | putative serine protein kinase, PrkA |
|---|
| Protein accession | YP_001189496 |
|---|
| Protein GI | 146309031 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2766] Putative Ser protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATTT TCAGTCACTT CCAACAGCGT TTCGAGGCGA CCCGCCAGGA GGAGTACTCG
CTGCAGGAGT ATCTCGAACT GTGCAAACAG GATCGCAGCG CTTACGCCAC TGCGGCCGAG
CGCCTGCTGA TGGCTATCGG CGAACCGGAG TTGCTCGACA CTTCGACCAA CTCGCGTCTC
TCGAGAATCT TTTCCAACAA GGTGATCCGT CGCTATCCGG CCTTCGCCGA CTTCCACGGC
ATGGAAGAGT GCATCGACCA GATCGTCTCC TACTTCAGGC ATGCCGCGCA GGGCCTGGAA
GAGAAGAAAC AGATCCTTTA CCTGCTGGGC CCGGTGGGGG GCGGTAAATC CTCGCTGGCC
GAAAAGCTCA AGCAGCTGAT GGAGAAGGTG CCCTTCTACG CCATCAAGGG CTCGCCGGTG
TTCGAGTCGC CGCTGGGGCT GTTCAACGCC GCCGAGGATG GCGCCATCCT CGAAGAGGAC
TACGGCATCC CGCGCCGCTA CCTCAACTCG ATCATGTCGC CCTGGGCCAC CAAGCGCCTG
CAGGAGTTCG GCGGCGACAT CAGCCAGTTC CGCGTGGTCA AGCTCTATCC GTCGATCCTC
AACCAGATCG CCGTCGCCAA GACCGAGCCG GGCGACGAGA ACAACCAGGA CATTTCCGCC
CTGGTCGGCA AGGTGGATAT CCGCAAGCTG GAAGAATTCC CGCAGAACGA CGCCGACGCC
TACAGCTACT CGGGCGCGCT GTGCCGGGCC AACCAGGGCC TGATGGAATT CGTCGAGATG
TTCAAGGCGC CGATCAAGGT GCTGCACCCG CTGCTCACCG CCACCCAGGA GGGCAACTAC
AACAGCACCG AAGGCCTCGG CGCGATTCCC TACAGCGGTA TCCTGCTGGC TCACTCCAAT
GAATCCGAGT GGCACAGCTT CCGTAACAAC AAGAACAACG AGGCCTTCAT CGACCGTATC
TACATCGTCA AGGTGCCTTA CTGCCTGCGC GTCACCGACG AGGTGAAGAT CTACGACAAG
CTGCTGATCA ACAGCTCGCT GGCCAAGGCC CATTGCGCGC CGGACACGCT GAAGATGCTC
GCCCAGTTCA GCGTACTGAG CCGACTCAAG GAGCCGGAAA ACTCCAACAT CTACTCGAAG
ATGCGCGTCT ACGACGGCGA GAACCTCAAG GACACCGACC CGAAAGCCAA GTCGATCCAG
GAATACCGCG ACGCAGCCGG GGTCGACGAG GGCATGAACG GCCTGTCGAC CCGCTTCGCC
TTCAAGATCC TCTCCAAGGT ATTCAACTTC GACCCGCACG AGATCGCCGC CAACCCGGTG
CACCTGCTCT ACGTGCTGGA ACAGCAGATC GAACAGGAAC AGTTCCCTGC CGAAGTGCGC
GAGCGCTACC TGCGCTACAT CAAGGAGTAC CTGGCGCCGC GCTACATCGA GTTCATCGGC
AAGGAGATCC AGACCGCCTA CCTCGAATCC TACAGCGAAT ATGGGCAGAA CATCTTCGAC
CGCTACGTGC TGTACGCCGA CTTCTGGATT CAGGATCAGG AATACCGCGA TCCGGAAACC
GGCGAGATCC TCAACCGCGT GGCACTCAAC GAGGAACTGG AGAAGATCGA GAAGCCGGCC
GGCATCAGCA ATCCGAAGGA CTTCCGCAAC GAGATCGTCA ATTTCGTGCT ACGTGCCCGC
GCCAACAACA ACGGCAAGAA CCCCACCTGG CTCAGCTACG AGAAGCTGCG TGTGGTCATT
GAGAAGAAGA TGTTCTCCAA CACCGAGGAC CTGCTCCCGG TCATCAGCTT CAACGCCAAG
GGCAGCAAGG AGGAACAGCA GAAGCACAAC GACTTCGTCA AACGCATGGT CGAGCGCGGC
TACACCGAGA AGCAGGTGCG CCTGCTGTCG GAGTGGTACC TGCGGGTTCG CAAGTCTCAG
TAA
|
|---|
| Protein sequence | MSIFSHFQQR FEATRQEEYS LQEYLELCKQ DRSAYATAAE RLLMAIGEPE LLDTSTNSRL
SRIFSNKVIR RYPAFADFHG MEECIDQIVS YFRHAAQGLE EKKQILYLLG PVGGGKSSLA
EKLKQLMEKV PFYAIKGSPV FESPLGLFNA AEDGAILEED YGIPRRYLNS IMSPWATKRL
QEFGGDISQF RVVKLYPSIL NQIAVAKTEP GDENNQDISA LVGKVDIRKL EEFPQNDADA
YSYSGALCRA NQGLMEFVEM FKAPIKVLHP LLTATQEGNY NSTEGLGAIP YSGILLAHSN
ESEWHSFRNN KNNEAFIDRI YIVKVPYCLR VTDEVKIYDK LLINSSLAKA HCAPDTLKML
AQFSVLSRLK EPENSNIYSK MRVYDGENLK DTDPKAKSIQ EYRDAAGVDE GMNGLSTRFA
FKILSKVFNF DPHEIAANPV HLLYVLEQQI EQEQFPAEVR ERYLRYIKEY LAPRYIEFIG
KEIQTAYLES YSEYGQNIFD RYVLYADFWI QDQEYRDPET GEILNRVALN EELEKIEKPA
GISNPKDFRN EIVNFVLRAR ANNNGKNPTW LSYEKLRVVI EKKMFSNTED LLPVISFNAK
GSKEEQQKHN DFVKRMVERG YTEKQVRLLS EWYLRVRKSQ
|
|---|
| |