| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3998 |
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| Symbol | |
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| ID | 5110221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4371619 |
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| End bp | 4372299 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640505261 |
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| Product | phosphoglycolate phosphatase |
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| Protein accession | YP_001189477 |
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| Protein GI | 146309012 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.739792 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.543367 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCGC TGCGCGCGCT GTGCGGCGGT GAGCTGCCGC GCCTGGTGAT GTTCGACCTG
GACGGCACGC TGATCGACTC GGTGCCGGAT CTGGCCGCAG CGGTCGACCG CATGCTGGTC
GAGCTGGGCC GTCCGCCGGC CGGCGTGGAA CAGGTTCGCG AGTGGGTCGG CAACGGCGCC
CGGGTGCTGG TTCGGCGCGC CCTGGCCGGT GGCCTGGATC ACTCGGCCGT GGGCGAGGCC
GAGACGGAGC AGGCGCTGGC ACGCTTTCTC GATATCTACG CCGATTGCCA CAACCTGACC
GCGCTGTACC CCGGTGTGCA CGAGCTGCTC GAAGCCTTGA GCACGGCGGC CGTGGAGCTG
GCGGTGGTGA CCAACAAGCC GGAGCGTTTC GTCGCGCCGC TGCTGGATCA GGTCGGCCTG
GGCGGTTACT TCCGCTGGAT CATTGGCGGC GATACCCTGC CGCAGCAGAA GCCCGATCCG
GCTGCGCTGC TGCAGGTGAT GCATCTGGCT GGGGTCGAGG CGGCACAAGC GCTGTTCGTC
GGCGATTCGC GCAATGATGT GCTGGCCGCC CGCGCAGCCG GGGTGTCCTG CGTCGCCGTG
AGCTATGGCT ACAACCATGG CCGGCCGATT GCCGAGGAAA GTCCGGCGGT GGTGGTCGAT
AGCCTGGCCG AGCTGCTGTA A
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| Protein sequence | MKPLRALCGG ELPRLVMFDL DGTLIDSVPD LAAAVDRMLV ELGRPPAGVE QVREWVGNGA
RVLVRRALAG GLDHSAVGEA ETEQALARFL DIYADCHNLT ALYPGVHELL EALSTAAVEL
AVVTNKPERF VAPLLDQVGL GGYFRWIIGG DTLPQQKPDP AALLQVMHLA GVEAAQALFV
GDSRNDVLAA RAAGVSCVAV SYGYNHGRPI AEESPAVVVD SLAELL
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