Gene Pmen_3998 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3998 
Symbol 
ID5110221 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4371619 
End bp4372299 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content69% 
IMG OID640505261 
Productphosphoglycolate phosphatase 
Protein accessionYP_001189477 
Protein GI146309012 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.739792 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value0.543367 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCGC TGCGCGCGCT GTGCGGCGGT GAGCTGCCGC GCCTGGTGAT GTTCGACCTG 
GACGGCACGC TGATCGACTC GGTGCCGGAT CTGGCCGCAG CGGTCGACCG CATGCTGGTC
GAGCTGGGCC GTCCGCCGGC CGGCGTGGAA CAGGTTCGCG AGTGGGTCGG CAACGGCGCC
CGGGTGCTGG TTCGGCGCGC CCTGGCCGGT GGCCTGGATC ACTCGGCCGT GGGCGAGGCC
GAGACGGAGC AGGCGCTGGC ACGCTTTCTC GATATCTACG CCGATTGCCA CAACCTGACC
GCGCTGTACC CCGGTGTGCA CGAGCTGCTC GAAGCCTTGA GCACGGCGGC CGTGGAGCTG
GCGGTGGTGA CCAACAAGCC GGAGCGTTTC GTCGCGCCGC TGCTGGATCA GGTCGGCCTG
GGCGGTTACT TCCGCTGGAT CATTGGCGGC GATACCCTGC CGCAGCAGAA GCCCGATCCG
GCTGCGCTGC TGCAGGTGAT GCATCTGGCT GGGGTCGAGG CGGCACAAGC GCTGTTCGTC
GGCGATTCGC GCAATGATGT GCTGGCCGCC CGCGCAGCCG GGGTGTCCTG CGTCGCCGTG
AGCTATGGCT ACAACCATGG CCGGCCGATT GCCGAGGAAA GTCCGGCGGT GGTGGTCGAT
AGCCTGGCCG AGCTGCTGTA A
 
Protein sequence
MKPLRALCGG ELPRLVMFDL DGTLIDSVPD LAAAVDRMLV ELGRPPAGVE QVREWVGNGA 
RVLVRRALAG GLDHSAVGEA ETEQALARFL DIYADCHNLT ALYPGVHELL EALSTAAVEL
AVVTNKPERF VAPLLDQVGL GGYFRWIIGG DTLPQQKPDP AALLQVMHLA GVEAAQALFV
GDSRNDVLAA RAAGVSCVAV SYGYNHGRPI AEESPAVVVD SLAELL