| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3979 |
|---|
| Symbol | |
|---|
| ID | 5110202 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4359469 |
|---|
| End bp | 4359861 |
|---|
| Gene Length | 393 bp |
|---|
| Protein Length | 130 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640505242 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001189458 |
|---|
| Protein GI | 146308993 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000000468528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.158193 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAG AGGGTTTCGA GGTCGATTTT GATTGGGACA AGGCAATGGC GTTCGATGAA
GACGACTGCC TGAGCCTGAA TCCCTTTGAA GGCGACTTTG GCGACGGCCG CGACCGGTGC
CTGAAAGATC GCTTCGTAAC TGCGGGCAAG GATCACGTTG CCATCTGCCA CGACTGCGGC
GGCGATATCG CCAAGGGCGA GCGCCACCGC AGCCGCGTCG ATATCGCTGA TGGTGAATTC
TTCACTTTTC GTTGGTGCCG CGTGTGCTGT GCCGCGCATG CGATGTCATG GCTGGACAAT
GGCTCGTGGA TGGAGTCCCG ATGCGAGCTT GGCCGCGTGC GTCGCGAGGG AGTCACCATT
GGATCGTTCG GAGTGAGGGC CGGCCATGAC TGA
|
|---|
| Protein sequence | MSAEGFEVDF DWDKAMAFDE DDCLSLNPFE GDFGDGRDRC LKDRFVTAGK DHVAICHDCG
GDIAKGERHR SRVDIADGEF FTFRWCRVCC AAHAMSWLDN GSWMESRCEL GRVRREGVTI
GSFGVRAGHD
|
|---|
| |