Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3978 |
Symbol | |
ID | 5110201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4357242 |
End bp | 4359476 |
Gene Length | 2235 bp |
Protein Length | 744 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640505241 |
Product | virulence-associated E family protein |
Protein accession | YP_001189457 |
Protein GI | 146308992 |
COG category | [R] General function prediction only [S] Function unknown |
COG ID | [COG4643] Uncharacterized protein conserved in bacteria [COG5545] Predicted P-loop ATPase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00795636 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.108518 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGACC GTCACGAGTT GCTCGACGAT GTGCTGGCCC AGCTGCAGGC CGCTGACCTT CGCCCTAAAA CTCCGCTGGT GATCGGCAAG CGCACCCGCT GCGAGGTGGA GGGCGACAAG GCGCCGGAGA AGACGGGCTG GTATGTGATC TATGAGCACA TGGGCTCGAA GGGCGAAACC TTCTACTGTG GCTCGTTCGG CGATTGGCGC TCGGGCGAGA AGGGCAGCTG GCACAAGATC AAGCCGAAGG GCGGGAAGAT CTCGGCCGAG GATCGCGCCG TGATGAGGGC GCGAGCCGAG GAGGGCCAGC GCAGGGCGGC CGAGGCCGAG CAGAAGAAGC ACCGCACCGC CGCGCGGCGG GCCGCTGGCA TCTGGAAGTA TCTGGAGGAA AAGGGGCACT GCGCCTACCT GGATGCCAAG CGCGTCGGCG GCTTCGGGCT GCGTTACAAG CGGAAGTCGG GCACTGCCCT GGTGCCGATG CGCAGCGTGA AGACGTGGGA CATTGTTGGC CTGCAGGTGC TGTACCCGGC CGTAGTGCCG AAGCTGGGCC GGAACAAGAC CTATTGGCCC TATGGCCTGG AGAAGGAGGG CGCGGTGCAT CTGCTCGGCC CGGAGCCAGA GCCAGGTGAC ACCATTCTGG TGTGCGAGGG GTACGCGACG GGCGCAAGCC TGTACATGGC GACTTCGCTG ACGGTGGCGG TGTGCTTCGA CGCGGGCAAC CTGTTGCCGG TGGCGCAGGG GTTGCGGGTG CGCTATCCGG GTCGGCCGTT GGTGTTCTGT GCCGACGATG ACTGGAAGAC TGAGATTCAG GGCAAGCCGG TGAACGTGGG CAAGATCAAG GCCGAGAACG CGGCGCACCT CGTCGGCGGC CGCGTTGTGT TGCCGGTGTT CGATAGCGAG CGCGAGGACC GGTGGACGGA CTTCAACGAC CTGCACTGCG CCGAGGGGCT TGAGGCGGTG AAGCGCCAGG TGGAGGCGGT TGTGCGGCCT GCCACTGACG CGCCCTGGCG GGAGAAGCTG CAGTATGCGG AGAAGGGCGG GATGATCGCT CACCCGTACA ACGTGGCGTT GATCCTGGGC AACGATGACC GCTGGGGCAA GGTGATTGCG TTCGATTCGT TCAGCTCGAA GATCCGCAAG TTGCGCACGC CGCCGTATGG GGGAAGCGCT GGGGATTGGA GCGACCTCGA TGACATCAAG GTGATGAACT GGCTGGCCGA GACCTACGGC TTGCGGGTGA AGACTGCGCA TGTGGTGGAG GCGGTGAACG CGGTGGCGCA TGACAATGCG TTTCACCCGG TGCGCGAGTA TCTGGATGGG TTGACCTGGG ATGGCACGCC GCGCCTGGAG ACGTGGCTGC AGCGGCACCT CGGCGTGGCG GATAGCGAGT ACGCGCGGAA GGTGAGCAAG CGCTGGCCGT TGTCTGCGGT GGCTCGGGTG TTTGAGCCGG GCTGCAAGGC GGACTCGGTG CTGATCCTCG AAGGGGCGCA GGGTGCGGGT AAGTCCACCT CGATGTCGAT CCTGGGCGGG TTGTGGTTCA TGGATACGCC GTTCAACCTG GGCGACAAGG ATGGCTATCA GGCGATCCGG GGTAAGTGGA TCGTGGAGCT GGGCGAGCTG GACGCCTTCA ACAAGGCTGA GTCGACGCGG GCCAAGCAGT TTTTCTCGGC CTCGGTGGAT ACGTACCGGG AGAGCTACGG GCGCAGGGTG CTGGATGTGC CGCGCCAGTG CGTATTCGTG GGTACGACGA ACCAAGACGA GTACCTGAAG GACGACACTG GGAACCGCCG TTACTGGCCG GTGATGTGCA CGAAGGTGGC ACTGGACGGC CTGCGGGCCG AGCGCGATCA ACTCTGGGCC GAGGCGGTAG CGTGTTATCG CGCTGGGCAT CCTTGGTGGG TGGATCGGGA CGAGGCGGAA ATCTTCGCCG CTGAGCAGGA CCAGCGCTAT CAGGCGGATA TGTGGGAGGA GCCCATCATC GCCTATCTGA GCCAGCCGAC TGCCGGCGAG AGCGTGACGG GGGCGCAGAT CCTTGAGAAG GCGTTGAACA TCGACCCGAG CCATTGGGGA AAGCCGGAGC AGATGCGGGT GGGCAAGATC ATGCATCGGC TCAAGTGGCC ACGGCGGCGG CAGAGCAAGC CGGACAGGCC GACAGGTTCG CGCGGGTACG TGTACGTGCG GCCGCCCGAG TGGAAGAAGG GCGCGAAGCC CGAGCAGAGG GAGGCCGCAT TTTGA
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Protein sequence | MTDRHELLDD VLAQLQAADL RPKTPLVIGK RTRCEVEGDK APEKTGWYVI YEHMGSKGET FYCGSFGDWR SGEKGSWHKI KPKGGKISAE DRAVMRARAE EGQRRAAEAE QKKHRTAARR AAGIWKYLEE KGHCAYLDAK RVGGFGLRYK RKSGTALVPM RSVKTWDIVG LQVLYPAVVP KLGRNKTYWP YGLEKEGAVH LLGPEPEPGD TILVCEGYAT GASLYMATSL TVAVCFDAGN LLPVAQGLRV RYPGRPLVFC ADDDWKTEIQ GKPVNVGKIK AENAAHLVGG RVVLPVFDSE REDRWTDFND LHCAEGLEAV KRQVEAVVRP ATDAPWREKL QYAEKGGMIA HPYNVALILG NDDRWGKVIA FDSFSSKIRK LRTPPYGGSA GDWSDLDDIK VMNWLAETYG LRVKTAHVVE AVNAVAHDNA FHPVREYLDG LTWDGTPRLE TWLQRHLGVA DSEYARKVSK RWPLSAVARV FEPGCKADSV LILEGAQGAG KSTSMSILGG LWFMDTPFNL GDKDGYQAIR GKWIVELGEL DAFNKAESTR AKQFFSASVD TYRESYGRRV LDVPRQCVFV GTTNQDEYLK DDTGNRRYWP VMCTKVALDG LRAERDQLWA EAVACYRAGH PWWVDRDEAE IFAAEQDQRY QADMWEEPII AYLSQPTAGE SVTGAQILEK ALNIDPSHWG KPEQMRVGKI MHRLKWPRRR QSKPDRPTGS RGYVYVRPPE WKKGAKPEQR EAAF
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