| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3926 |
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| Symbol | |
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| ID | 5106460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4306788 |
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| End bp | 4307753 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640505184 |
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| Product | biotin--protein ligase |
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| Protein accession | YP_001189405 |
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| Protein GI | 146308940 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0340] Biotin-(acetyl-CoA carboxylase) ligase |
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| TIGRFAM ID | [TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region
[TIGR00122] BirA biotin operon repressor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.541608 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 66 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGCAT TGTTGAAACT TCTGCAGGAT GGGCGCTTTC ACTCCGGCGA GGCCCTGGGG
GGCGAGCTGG GTATCAGTCG TAGCGCGATC TGGAAGCAAT TACAGAGTCT GGAGGCTGAG
CTGGGGATCG AGGTGTTCAA GGTTCCCGGT CGCGGTTACC GGTTGTCTGC CCCTATGACA
TTGCTGAATG CCAAAGAGAT TGAGCGAAAC GCCGGTGATA CGGGGTGGCC AGTTTTCGTT
GAGGCCAGCC TGGATTCGAC CAATGCGGAA GTGTTTCGCC GCCTCGATTC CGGTTGTGGA
GCGCCCTTCG TCCTGCTTTC CGAGCGGCAG ACTGCCGGGC GTGGGAGGCG AGGGCGTGCC
TGGGCGAGCC CCTTCGCGGA AAATCTTTAC TGCAGTTTGG CGTTGCGGGT CGATGGCGGT
ATGCGCCAGG TCGAGGCTCT CAGCCTGACG GTCGGCTTGG CGGTGGCAAA GGCGCTACAG
GTCAGTGGTC TGGAGGCTGC CGGGCTGAAA TGGCCGAATG ACGTTCTGGT CAATGGTCAA
AAGATTGCCG GCATACTGCT GGAGCTTTCC GGAGATCCGG CCGATGTCTG TCATGTCGTC
ATAGGCGTTG GGATCAACGT GAACATGGCT GTCGATACGA CGGCGGCGAT AGATCAGCCC
TGGACGTCGA TGCGTCAGCA TCTGGGGCGA ATGATCGATC GAAATGAGCT GGCGGGCGAG
GTGCTTCGTC AGTTGACGCG CTATGTGTCT CTTCATTGGC AGAGTGGTTT TTCCAGCGTG
CGCGATGAAT GGGAGGTGCT CCATCTGTGG CGCGGCCGTC CGGTGGCGCT ACTGGCTGGC
ACCAACGCGA CGCTGGGGGT GGTGCTGGGT GTCGACGATC GTGGCGCCAT TCGTCTCGAG
GTGGATGGTG TCGAACAGGT TTTCAGTGGC GGTGAGTTGA GCCTGAGGTT GCAGCATGAT
TCTTGA
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| Protein sequence | MLALLKLLQD GRFHSGEALG GELGISRSAI WKQLQSLEAE LGIEVFKVPG RGYRLSAPMT
LLNAKEIERN AGDTGWPVFV EASLDSTNAE VFRRLDSGCG APFVLLSERQ TAGRGRRGRA
WASPFAENLY CSLALRVDGG MRQVEALSLT VGLAVAKALQ VSGLEAAGLK WPNDVLVNGQ
KIAGILLELS GDPADVCHVV IGVGINVNMA VDTTAAIDQP WTSMRQHLGR MIDRNELAGE
VLRQLTRYVS LHWQSGFSSV RDEWEVLHLW RGRPVALLAG TNATLGVVLG VDDRGAIRLE
VDGVEQVFSG GELSLRLQHD S
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