| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3915 |
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| Symbol | |
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| ID | 5106449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4291611 |
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| End bp | 4295810 |
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| Gene Length | 4200 bp |
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| Protein Length | 1399 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640505169 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001189394 |
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| Protein GI | 146308929 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAGACC TACTGAATTT GCTGAAAAAC CAGGGTCAGA TCGAAGAGTT CGACGCCATC
CGCATCGGGT TGGCCTCGCC TGAGATGATC CGTTCGTGGT CGTTCGGTGA AGTTAAAAAG
CCGGAAACCA TCAACTACCG TACCTTCAAG CCTGAGCGCG ACGGCCTGTT CTGCGCCAAG
ATCTTTGGCC CGGTCAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTCAAGCAT
CGCGGCGTGA TCTGCGAGAA GTGCGGCGTT GAAGTGGCCC TGGCCAAGGT TCGTCGTGAG
CGCATGGCGC ACATCGAACT GGCCTCGCCG GTTGCCCACA TCTGGTTCCT CAAGTCGCTG
CCGTCCCGTA TCGGCCTGCT GATGGACATG ACCCTGCGTG ACATCGAGCG CGTGCTCTAT
TTCGAGAGCT ACGTGGTGAT CGATCCGGGC ATGACGACCC TCGAGAAGGG CCAGCTGCTG
AACGACGAGC AGTACTTCGA AGCCCTCGAA GAGTTCGGTG ACGACTTCGA CGCGCGCATG
GGCGCCGAGG CCGTGCGCGA GCTGCTGCAC GCCATCGACC TGGATCACGA GATCGGCCGC
CTGCGTGAAG AGATTCCGCA GACCAACTCC GAGACCAAGA TCAAGAAGCT GTCCAAGCGC
CTGAAGCTGA TGGAAGCCTT CAAGGACTCC GGCAACCTGC CGGAGTGGAT GGTGCTGACC
GTTCTGCCGG TGCTGCCGCC GGACCTGCGT CCGCTGGTAC CGCTGGATGG CGGCCGCTTC
GCGACTTCGG ATCTGAACGA TCTGTATCGC CGCGTGATCA ACCGTAACAA CCGTCTGAAG
CGCCTGCTCG ATCTGTCGGC GCCGGACATC ATCGTGCGTA ACGAAAAGCG CATGCTGCAG
GAAGCGGTCG ACGCCCTGCT CGACAACGGC CGTCGCGGTC GCGCCATCAC TGGCTCGAAC
AAGCGTCCGC TGAAGTCGCT GGCCGACATG ATCAAAGGTA AGCAAGGTCG CTTCCGTCAG
AACCTGCTCG GTAAGCGCGT GGACTACTCC GGTCGTTCCG TGATCACCGT GGGCCCGACC
CTGCGTCTGC ACCAGTGCGG TCTGCCGAAG AAGATGGCCC TCGAGCTGTT CAAGCCGTTC
ATCTTCGGCA AGCTGGAAAT GCGTGGTCTG GCGACCACCA TCAAGGCGGC CAAGAAGATG
GTCGAGCGCG AGCTGCCGGA GGTCTGGGAC GTTCTCGCCG AAGTGATTCG CGAACACCCC
GTACTGCTCA ACCGTGCACC GACCCTGCAC CGTCTGGGTA TCCAGGCGTT CGAGCCGGTA
CTGATCGAAG GTAAGGCGAT TCAGCTGCAC CCGCTGGTCT GCGCCGCGTA CAACGCCGAC
TTCGACGGTG ACCAGATGGC CGTTCACGTG CCGCTGACCC TGGAAGCCCA GCTCGAAGCG
CGCGCGCTGA TGATGTCGAC CAACAACATC CTCTCGCCCG CCAACGGCGA GCCGATCATC
GTGCCGTCGC AGGACGTGGT TCTGGGTCTG TACTACATGA CCCGTGAAGC GGTGAACGCC
AAGGGTGAAG GTCGCGTCTT CGCCGACCTG CAGGAAGTCG ACCGCGTGTT CCGCGCCGGC
GAAGCGTCCC TGCACGCCCG CGTGAAAGTG CGTATCAACG AAACCGTCAA AGAAAAAGAC
GGTTCGATCA CCAAGAACAC CCGTATCGTC GACACCACCG TCGGCCGTGC GCTGCTGTTC
CAGATCGTGC CGGCCGGCCT GTCCTACGAC GTGGTCAACC AGCCGATGAA GAAGAAGGCG
ATCTCCAAGC TGATCAACCA GTGCTACCGC ACCGTGGGTC TGAAGGACAC CGTCATCTTC
GCTGACCAGC TGATGTACAC CGGTTTCGCC TACTCGACCA TCTCCGGTGT GTCGATCGGC
GTGAACGACT TCGTCATCCC GGAAGAAAAG GCGCGCATCA TCGACGCCGC CACCGAGGAA
GTGAAGGAAA TCGAGTCGCA GTACGCCTCT GGCCTGGTCA CCCAGGGCGA GAAGTACAAC
AAGGTGATCG ACCTCTGGTC GAAGGCCAAC GACGAAGTGT CCAAGGCGAT GATGGCCAAC
CTCTCGAAAG AGCCGGTGGT CGATCGCGAA GGCAAGACCG TCGAGCAGGA GTCCTTCAAC
TCCATGTACA TGATGGCGGA CTCCGGTGCG CGTGGTAGCG CCGCCCAGAT CCGTCAGCTG
GCCGGTATGC GTGGTCTGAT GGCCAAGCCG GACGGCTCCA TCATCGAGAC GCCGATCACC
GCGAACTTCC GCGAAGGTCT GTCGGTTCTG CAGTACTTCA TCTCCACCCA CGGTGCGCGT
AAAGGTCTGG CGGATACCGC ACTGAAGACC GCGAACTCCG GTTACCTGAC CCGTCGTCTG
GTCGACGTGG CCCAGGATCT GGTGGTGACC GAGATCGATT GCGGCACCGA GCAGGGCCTG
CTGATGACCC CGCACATCGA AGGCGGCGAC GTCGTCGAGC CGCTGGGTGA GCGCGTACTG
GGCCGTGTGA TTGCCAAGGA TGTGTTCAAG CCGGGCACCG AGGACGTCAT CGTTCCGGCC
GGTACCCTGA TCGACGAGAA GTGGGTCGAG TTCATCGAGC TCAACAGCGT CGACGAAGTG
GTCGTGCGTT CGCCGATCAC CTGCGAAACC CGCTACGGCA TCTGCGCCAA GTGCTACGGT
CGCGACCTGG CTCGCGGTCA CCAGGTCAAC ATCGGTGAAG CGGTCGGCGT CATCGCCGCC
CAGTCCATCG GTGAGCCGGG TACCCAGCTG ACCATGCGTA CCTTCCACAT CGGTGGTGCT
GCAAGCCGTA CCTCGGCTGC CGACAGCGTC CAGGTGAAGA ACGGTGGTGC GATCCGTCTG
CACAACCTGA AGCACGTCGA GCGTGTCGAC GGCAACCTGG TAGCGGTTTC CCGCTCCGGT
GAGCTGGCCG TGGCCGACGA GTTCGGTCGT GAGCGCGAGC GCTACAAGCT GCCGTACGGT
GCCGTGATTT CGGTGAAGGA AGGTGACAAG GTCGACGCTG GCGCCATCGT CGCCAAGTGG
GACCCGCACA CCCACCCGAT CGTGACCGAA ATGAAGGGTA TCGTGACCTT CGTCGGCATG
GAGGAGGGCA TCACCATCAA GCGTCAGACC GACGAACTGA CCGGTCTGAC CAACATCGAG
GTTCTCGATC CGAAGGATCG TCCGGCTGCT GGCAAGGACA TTCGTCCGGC CATCAAGATG
GTCGACGCCA ACGGCAAGGA ACTGCTGCTG CCGGGTACCG ACGTTCCCGC CCAGTACTTC
CTGCCTGCCA ACGCCCTGGT CGGCGTGGCG GACGGTGCGC AGATCGCGGT CGGTGACGTT
ATCGCCCGTA TCCCGCAGGA AACCTCGAAG ACTCGCGACA TCACCGGTGG TCTGCCGCGC
GTTGCCGACC TGTTCGAAGC TCGTCGTCCG AAGGAAGCTT CGATCCTGGC GGAAATCAGC
GGCACCATCA GCTTCGGCAA GGAGACCAAG GGCAAGCGCC GTCTGGTCAT CACCCCGACC
GATGGCAGCG ATCCGTACGA GGAGCTGATT CCGAAGTGGC GTCACCTGAA CGTCTTCGAG
GGCGAACAAG TGAACCGCGG CGAAGTCATC TCCGACGGCC CGAGCGATCC GCACGACATC
CTGCGTCTGC TGGGTGTCAG CGCGCTGGCC AAGTACATCG TCAACGAGAT CCAGGACGTT
TACCGTCTGC AGGGCGTGAA GATCAACGAC AAGCACATCG AGACCATCCT GCGTCAGATG
CTGCGTAAGG TTGAAGTCAC CGAGTCCGGC GATTCGTCCT TCATCAAGGG CGACCAGATG
GAACTCACCC AGGTTCTGGG CGAGAACGAG CGTCTGGCCG AAGAGGACAA GTTCGTCGCC
AAGTACACCC GCGTACTGCT GGGTATCACC AAGGCGTCGC TGTCCACCGA GTCCTTCATC
TCGGCAGCGT CCTTCCAGGA AACCACCCGC GTCCTCACCG AGGCGGCGGT CACTGGCAAG
CGCGACTACT TGCGTGGTCT GAAAGAGAAC GTGGTCGTGG GTCGTCTGAT CCCGGCCGGT
ACCGGTCTGG CCTATCACAG CGAGCGCAAG CGCAAGCGTG ATGCCGACAA GCCGGTACGT
GTCAGCGCCA GTGAGGTGGA AGCCGCACTG ACCGAAGCGC TGAACTCGAG CGGAAATTGA
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| Protein sequence | MKDLLNLLKN QGQIEEFDAI RIGLASPEMI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVALAKVRRE RMAHIELASP VAHIWFLKSL
PSRIGLLMDM TLRDIERVLY FESYVVIDPG MTTLEKGQLL NDEQYFEALE EFGDDFDARM
GAEAVRELLH AIDLDHEIGR LREEIPQTNS ETKIKKLSKR LKLMEAFKDS GNLPEWMVLT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLSAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IFGKLEMRGL ATTIKAAKKM VERELPEVWD VLAEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTREAVNA KGEGRVFADL QEVDRVFRAG
EASLHARVKV RINETVKEKD GSITKNTRIV DTTVGRALLF QIVPAGLSYD VVNQPMKKKA
ISKLINQCYR TVGLKDTVIF ADQLMYTGFA YSTISGVSIG VNDFVIPEEK ARIIDAATEE
VKEIESQYAS GLVTQGEKYN KVIDLWSKAN DEVSKAMMAN LSKEPVVDRE GKTVEQESFN
SMYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLSVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EIDCGTEQGL LMTPHIEGGD VVEPLGERVL
GRVIAKDVFK PGTEDVIVPA GTLIDEKWVE FIELNSVDEV VVRSPITCET RYGICAKCYG
RDLARGHQVN IGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRTSAADSV QVKNGGAIRL
HNLKHVERVD GNLVAVSRSG ELAVADEFGR ERERYKLPYG AVISVKEGDK VDAGAIVAKW
DPHTHPIVTE MKGIVTFVGM EEGITIKRQT DELTGLTNIE VLDPKDRPAA GKDIRPAIKM
VDANGKELLL PGTDVPAQYF LPANALVGVA DGAQIAVGDV IARIPQETSK TRDITGGLPR
VADLFEARRP KEASILAEIS GTISFGKETK GKRRLVITPT DGSDPYEELI PKWRHLNVFE
GEQVNRGEVI SDGPSDPHDI LRLLGVSALA KYIVNEIQDV YRLQGVKIND KHIETILRQM
LRKVEVTESG DSSFIKGDQM ELTQVLGENE RLAEEDKFVA KYTRVLLGIT KASLSTESFI
SAASFQETTR VLTEAAVTGK RDYLRGLKEN VVVGRLIPAG TGLAYHSERK RKRDADKPVR
VSASEVEAAL TEALNSSGN
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