Gene Pmen_3913 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3913 
Symbol 
ID5106447 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4290518 
End bp4290988 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content59% 
IMG OID640505167 
Product30S ribosomal protein S7 
Protein accessionYP_001189392 
Protein GI146308927 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0049] Ribosomal protein S7 
TIGRFAM ID[TIGR01029] ribosomal protein S7, bacterial/organelle 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.240756 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAAGAC GTCGTGTAGC AGCCAAGCGT GAGATCCTGG ACGATCCGAA ATACGGAAGC 
CAGATCCTCG CCAAATTCAT GAACCACGTG ATGGAAAGCG GCAAGAAGGC CGTGGCCGAG
CGCATCGTTT ACGGTGCTCT GGATACTGTC AAAGCACGCA AGAACAGCGA TCCCCTGGAG
ATCTTCGAGA AAGCTCTCGA CGCCATCGCT CCGCTGGTCG AAGTCAAGTC CCGCCGTGTA
GGCGGTGCTA CCTACCAGGT TCCGGTCGAA GTTCGTCCGT CCCGTCGTAA CGCCCTGGCT
ATGCGCTGGC TGGTGGACTA CGCGCGCAAG CGCGGCGAGA AGTCCATGGC TCTGCGTCTG
GCTGGTGAGC TGCTGGATGC TGCTGAAGGC AAAGGCGCTG CTGTCAAGAA GCGTGAAGAC
GTGCACCGTA TGGCCGAGGC CAACAAGGCT TTCTCGCACT ACCGCTTCTA A
 
Protein sequence
MPRRRVAAKR EILDDPKYGS QILAKFMNHV MESGKKAVAE RIVYGALDTV KARKNSDPLE 
IFEKALDAIA PLVEVKSRRV GGATYQVPVE VRPSRRNALA MRWLVDYARK RGEKSMALRL
AGELLDAAEG KGAAVKKRED VHRMAEANKA FSHYRF