| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3908 |
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| Symbol | rplD |
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| ID | 5106442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4285319 |
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| End bp | 4285921 |
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| Gene Length | 603 bp |
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| Protein Length | 200 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640505162 |
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| Product | 50S ribosomal protein L4 |
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| Protein accession | YP_001189387 |
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| Protein GI | 146308922 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0088] Ribosomal protein L4 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.0610127 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAATTGA ATGTAAATGG CGCTCAGGCG ATCGAAGTGT CCGATGCGAC CTTCGGTGGC
GAGTTCAACG AGACCCTGGT TCACCAAGCA GTCGTAGCCT ACATGGCTGG CGGCCGTCAG
GGCACCAAAG GCCAGAAGTC CCGTTCCGAC GTTTCCGGTG GCGGCAAGCG CCCGTGGCGT
CAGAAGGGCA CCGGTCGTGC TCGTGCTGGT ACCACTCGTG GTCCGATCTG GCGTGGCGGT
GGTGTGACCT TCGCAGCGTC CACCCGTAAC CACGACCAAA AGCTGAACAA GAAGATGTAC
CGCGCTGCTC TGCGCTCCAT CCTTGCTGAG CTGGTTCGTA CCGACCGTCT GGTAGTGGTT
GAAGACTTCG CTGTCGAAGC TCCGAAAACC AAGGCTCTGC TGAGCAAGCT GAACGGCCTG
GGTCTGAACG ATGTGCTGAT CGTATCCGAT GCGGTCGATC AGAACCTGTA CCTGGCTGCC
CGCAACCTGC CGCACGTCGA CGTACGTGAC GTCCAGGGTT CCGATCCGGT CAGCCTGATC
GCGTACGAAA AAGTGCTGGT CACTGTTTCG GCCGTGAAGA AATTCGAGGA GCTGCTGGGA
TGA
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| Protein sequence | MQLNVNGAQA IEVSDATFGG EFNETLVHQA VVAYMAGGRQ GTKGQKSRSD VSGGGKRPWR
QKGTGRARAG TTRGPIWRGG GVTFAASTRN HDQKLNKKMY RAALRSILAE LVRTDRLVVV
EDFAVEAPKT KALLSKLNGL GLNDVLIVSD AVDQNLYLAA RNLPHVDVRD VQGSDPVSLI
AYEKVLVTVS AVKKFEELLG
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