| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3906 |
|---|
| Symbol | rplB |
|---|
| ID | 5106440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4284184 |
|---|
| End bp | 4285008 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640505160 |
|---|
| Product | 50S ribosomal protein L2 |
|---|
| Protein accession | YP_001189385 |
|---|
| Protein GI | 146308920 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0090] Ribosomal protein L2 |
|---|
| TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.289546 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATCG TTAAATGCAA ACCGACTTCC GCTGGCCGCC GTTTTGTGGT CAAGGTGGTC
AATCAGGAGC TGCACAAAGG CGCTCCGTAC GCTCCGCTGC TCGAGAAGAA GTCGAAGTCC
GGTGGTCGTA ACAACAACGG CCGTATCACC ACCCGTCATA TCGGTGGTGG CCACAAGCAG
CATTACCGTC TGGTCGACTT CCGTCGCAAC GACAAGGATG GCATCCCTGC CACCGTCGAG
CGCGTGGAAT ACGATCCGAA CCGTACTGCT CACATCGCTC TGCTGAAGTA TGCCGACGGT
GAGCGTCGCT ACATCATCGC CCCGAAAGGC GTTGTAGCTG GCGATCAGCT GGTAGCCGGC
AACATGGCGC CGATCAAGCC GGGCAACAGC CTGCAGCTGC GCAACATTCC GGTAGGTTCG
ACCGTTCACG GTATCGAGCT GAAGCCGGGC AAAGGCGCGC AGATCGCTCG TTCCGCTGGT
GCTTCCGCTC AGCTGATCGC GCGTGAAGGT GCTTATGTGA CTCTGCGTCT GCGCTCCGGC
GAAATGCGCA AAGTCCTGGC TGAGTGCCGT GCGACCCTGG GCGAAGTCTC GAACTCCGAG
CACAGCCTGC GTTCGCTGGG TAAGGCTGGT GCCAAGCGCT GGCGTGGCGT TCGTCCGACC
GTTCGTGGTG TTGCCATGAA CCCGGTTGAT CACCCGCACG GTGGTGGTGA AGGTCGTACC
TCCGGTGGTC GTCATCCGGT GTCGCCGTGG GGCTTCCCGA CCAAGGGCGC GAAGACCCGT
GCTAACAAGC GCACCGACAA CATGATCGTC CGTCGTCGCA AGTAA
|
|---|
| Protein sequence | MAIVKCKPTS AGRRFVVKVV NQELHKGAPY APLLEKKSKS GGRNNNGRIT TRHIGGGHKQ
HYRLVDFRRN DKDGIPATVE RVEYDPNRTA HIALLKYADG ERRYIIAPKG VVAGDQLVAG
NMAPIKPGNS LQLRNIPVGS TVHGIELKPG KGAQIARSAG ASAQLIAREG AYVTLRLRSG
EMRKVLAECR ATLGEVSNSE HSLRSLGKAG AKRWRGVRPT VRGVAMNPVD HPHGGGEGRT
SGGRHPVSPW GFPTKGAKTR ANKRTDNMIV RRRK
|
|---|
| |