| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3893 |
|---|
| Symbol | rplR |
|---|
| ID | 5106427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4278871 |
|---|
| End bp | 4279221 |
|---|
| Gene Length | 351 bp |
|---|
| Protein Length | 116 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640505147 |
|---|
| Product | 50S ribosomal protein L18 |
|---|
| Protein accession | YP_001189372 |
|---|
| Protein GI | 146308907 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0256] Ribosomal protein L18 |
|---|
| TIGRFAM ID | [TIGR00060] ribosomal protein L18, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00000259754 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA AAAAAGTTAC TCGTCTGCGT CGCGCTCGCA AAGCACGCCT GAAAATGCAC
GAGCTCGAAG CCGTGCGTCT GTGCGTGTAT CGCTCTTCGC AACACATCTA CGCCCAGGTC
ATTTCGGCCG ACGGCAGCAA GGTTCTGGCC AGCGCCTCGA CCTTGGACAA AGCACTGCGT
GATGGCGCCA CTGGCAACGT CGACGCCGCC AAGAAAGTAG GTCAGCTGGT TGCCGAGCGC
GCGAAAGCCG CTGGTGTGAC TCAGGTTGCA TTCGACCGTT CTGGCTTCAA GTACCACGGT
CGCGTCAAGG CGCTGGCCGA TGCTGCTCGT GAAGGCGGGC TGGAGTTCTA A
|
|---|
| Protein sequence | MTDKKVTRLR RARKARLKMH ELEAVRLCVY RSSQHIYAQV ISADGSKVLA SASTLDKALR
DGATGNVDAA KKVGQLVAER AKAAGVTQVA FDRSGFKYHG RVKALADAAR EGGLEF
|
|---|
| |