Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3889 |
Symbol | secY |
ID | 5106423 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4276422 |
End bp | 4277750 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640505143 |
Product | preprotein translocase subunit SecY |
Protein accession | YP_001189368 |
Protein GI | 146308903 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0201] Preprotein translocase subunit SecY |
TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.000822061 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTAAGC AAGGTGCTCT CTCAGCGCTG GCAGGTGGCG GGTTGTCCGA ACTCTGGGCT CGTTTGCGCT TCCTGTTCAT GGCGATCATC GTCTACCGGA TAGGTGCGCA CATCCCGGTT CCTGGCATCA ACCCAGACCG ACTGGCGGAT CTGTTCCGGC AGAATGAGGG GACCATTCTT AGCTTGTTCA ACATGTTTTC CGGCGGCGCG CTGGAGCGGA TGAGCATCTT TGCACTGGGG ATCATGCCGT ACATCTCGGC ATCGATCATC ATGCAGCTGA TGACCGCCGT CAGCCCGCAG CTGGAGCAGT TGAAGAAGGA AGGTGAAGCT GGCCGTCGCA AGATCAGCCA GTACACCCGC TACGGCACTC TCGTCCTGGC GTTCGTTCAG GCCATCGGTA TGTCCGTTGG ACTGGCTAGT CAGGGCGTGG CGTTCTCGGT CGATTTCGGC TTCCATTTCG TGGCGATCAC CACTTTTGTG GCGGGCGCGA TGTTCATGAT GTGGCTGGGC GAGCAGATCA CCGAGCGCGG TGTCGGCAAC GGTATCTCGA TGCTGATCTT TGCAGGCATC GTGGCCGGTC TGCCGTCGGC GATCGGGCAG TCTTTCGAGT CTGCTCGTCA GGGCGATATC AACATCTTCG CTCTGATCGC CATCGGCCTG CTGGCAGTAG CGATCATCGG TTTCGTGGTG TTCATCGAGC GTGGTCAGCG TCGCATTGCG GTGCACTACG CCAAGCGTCA GCAGGGCCGC AAGGTCTTCG CTGCGCAGAC CAGCCACCTG CCGTTGAAGG TGAACATGGC GGGCGTAATC CCGGCCATTT TCGCCAGCAG CCTTCTGCTG TTCCCGGCCT CGCTGGGTGC CTGGTTCGGT CAGTCCGAGG GTTTGGGCTG GCTGCAGGAC ATTTCGCAGG CTATCGCTCC TGGTCAGCCG TTGAACATTC TGCTGTTTAG TGCAGGGATC ATTTTCTTCT GCTTCTTCTA CACGGCACTG ATGTTCAACC CGAAAGACGT AGCGGAAAAC CTGAAGAAGT CCGGTGCCTT TATTCCGGGC ATTCGTCCGG GCGAGCAGTC GGCACGCTAT ATCGATGGCG TTCTGACCCG CTTGACCATG TTCGGTGCTC TGTACATGAC GGCCGTGTGC CTGCTGCCCC AGTTCCTGGT GGTTGCGGCC AACGTTCCGT TCTACCTTGG CGGGACCTCG TTGCTGATCG TGGTCGTGGT TGTCATGGAC TTCATGTCCC AAGTGCAATC GCACCTCGTG TCTCACCAGT ACGATTCCCT GATGAAGAAA GCCAACCTGA AGGGCTATGG CAGCGGCATG CTCCGCTGA
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Protein sequence | MAKQGALSAL AGGGLSELWA RLRFLFMAII VYRIGAHIPV PGINPDRLAD LFRQNEGTIL SLFNMFSGGA LERMSIFALG IMPYISASII MQLMTAVSPQ LEQLKKEGEA GRRKISQYTR YGTLVLAFVQ AIGMSVGLAS QGVAFSVDFG FHFVAITTFV AGAMFMMWLG EQITERGVGN GISMLIFAGI VAGLPSAIGQ SFESARQGDI NIFALIAIGL LAVAIIGFVV FIERGQRRIA VHYAKRQQGR KVFAAQTSHL PLKVNMAGVI PAIFASSLLL FPASLGAWFG QSEGLGWLQD ISQAIAPGQP LNILLFSAGI IFFCFFYTAL MFNPKDVAEN LKKSGAFIPG IRPGEQSARY IDGVLTRLTM FGALYMTAVC LLPQFLVVAA NVPFYLGGTS LLIVVVVVMD FMSQVQSHLV SHQYDSLMKK ANLKGYGSGM LR
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