| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3884 |
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| Symbol | |
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| ID | 5106418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4273705 |
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| End bp | 4274706 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640505138 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_001189363 |
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| Protein GI | 146308898 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.283664 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATTT CGGTAAATGA GTTCCTGACC CCCCGTCACA TCGATGTGCA GGAGGTCAGT
CCGACCCGCG CCAAGATCAC CCTCGAGCCT CTCGAGCGTG GTTTCGGCCA TACCCTGGGC
AACGCGCTGC GTCGCATCCT GTTGTCCTCC ATGCCTGGCT GTGCAGTAGT CGAGGCCGAG
ATCGACGGCG TACTCCACGA GTACTCCGCG ATCGAAGGTG TGCAGGAAGA TGTAATCGAG
ATCCTGCTCA ACCTGAAAGG TCTGGCTATC AAGCTGCACG GCCGTGACGA AGTGACCCTG
ACTCTGGCTA AGAAGGGCCC GGGCGTAGTT ACCGCTGCCG ATATTCAGCT GGATCACGAT
GTCGAAATCG TCAATGGCGA CCACGTCATC GCCAACCTGG CCGCCAATGG CTCGCTGAAC
ATGAAGCTCA CCGTAGCTCG TGGTCGCGGC TATGAGCCGG CTGACGCGCG TCAGAGCGAC
GAAGATGAAA GCCGCAGCAT TGGTCGCTTG CAGCTGGATG CTTCGTTCAG CCCTGTGCGT
CGGGTTGCTT ACGTGGTGGA AAACGCCCGT GTCGAGCAGC GCACCAACCT GGACAAACTG
GTTATCGACC TGGAAACCAA CGGTACCCTG GATCCTGAAG AGGCCATCCG TCGTGCCGCG
ACCATCCTGC AGCAGCAGCT GGCCGCGTTC GTCGACCTCA AGGGCGACAG CGAGCCGGTA
GTGGTCGAGC AGGAAGACGA GATCGATCCG ATCCTGCTGC GTCCTGTCGA TGACCTGGAA
CTGACCGTAC GTTCGGCCAA CTGCCTCAAG GCAGAGAACA TCTACTACAT CGGCGACCTG
ATTCAGCGCA CCGAAGTAGA GCTGCTCAAA ACCCCGAACC TGGGCAAGAA ATCCCTGACC
GAAATCAAGG ATGTTCTGGC TTCTCGCGGT CTGTCCCTCG GTATGCGCCT CGATAACTGG
CCGCCGGCAA GTCTGAAGAA AGACGATAAG GCCACTGCCT GA
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| Protein sequence | MQISVNEFLT PRHIDVQEVS PTRAKITLEP LERGFGHTLG NALRRILLSS MPGCAVVEAE
IDGVLHEYSA IEGVQEDVIE ILLNLKGLAI KLHGRDEVTL TLAKKGPGVV TAADIQLDHD
VEIVNGDHVI ANLAANGSLN MKLTVARGRG YEPADARQSD EDESRSIGRL QLDASFSPVR
RVAYVVENAR VEQRTNLDKL VIDLETNGTL DPEEAIRRAA TILQQQLAAF VDLKGDSEPV
VVEQEDEIDP ILLRPVDDLE LTVRSANCLK AENIYYIGDL IQRTEVELLK TPNLGKKSLT
EIKDVLASRG LSLGMRLDNW PPASLKKDDK ATA
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