Gene Pmen_3861 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3861 
Symbol 
ID5106395 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4249688 
End bp4250560 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content65% 
IMG OID640505115 
Productthioredoxin 
Protein accessionYP_001189340 
Protein GI146308875 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3118] Thioredoxin domain-containing protein 
TIGRFAM ID[TIGR01068] thioredoxin 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.339067 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGACT CCCCTTACAT CTTCGACATC TCCGGCGCCG CCAACTTCGA GCAACTGGTG 
ATCGAGAACT CCTTTCACAA GCCGGTGCTG GTGGACTTCT GGGCCGAGTG GTGCGCGCCG
TGCAAGGCGC TGATGCCGAT GCTGGCGAAG ATCACCGAGG ACTATGCCGG CGAGCTGCTG
CTGGCCAAGG TCAATTGCGA TATCGAGCAG GACATCGTCA TGCGCTTCGG CATCCGCAGC
CTGCCCACCG TGGTGCTGTT CAAGAATGGT CAGCCGGTGG ACGGCTTCGC CGGCGCCCAG
CCGGAAGCGG CGATCCGCGA GATGCTCAAA CCGCACGTCG CCGAACCGGC GCCGGTTGCC
GCCGACCCGA TGGAGACCGC CCAGGCGCTG TTCGCCGAAG GCCGTTTCGC CGAAACCGAG
GCCCTGCTCA AGCAGGTGCT GACCGAGAAC AACGAGAACG CCGCGGCATT GATTCTCTAT
GCCCGCTGCC TGGCCGAGCG CGGCGAGCTG GGCGAGGCCC AAGTGGTGCT CGATGCGGTC
AAGGGCGACG AGCACAAGCA GGCGCTGGCC GGCGCCAAGG CGCAGCTGAC CTTCCTGCGC
CAGGCTGCCG ACCTGCCGGA AGTGGCCACG CTGAAAAGCC GCCTGGCACA GAATGCCGAG
GATGACGAAG CGGTCTACCA GCTCGCCGTG CAGCAATTGG CGCGTCAACA GTACGAAGCC
GCGCTGGATG GCCTGCTCAA ATTGTTCGTG CGCAACCGCA GCTACGGCGA CGGCCTGCCG
CACAAGACCC TGCTGCAGGT ATTCGATCTG CTCGGCGGCG ACCACCCGCT GGTCACCAGC
TACCGCCGCA AGCTGTACCA GGCGATCTAC TGA
 
Protein sequence
MSDSPYIFDI SGAANFEQLV IENSFHKPVL VDFWAEWCAP CKALMPMLAK ITEDYAGELL 
LAKVNCDIEQ DIVMRFGIRS LPTVVLFKNG QPVDGFAGAQ PEAAIREMLK PHVAEPAPVA
ADPMETAQAL FAEGRFAETE ALLKQVLTEN NENAAALILY ARCLAERGEL GEAQVVLDAV
KGDEHKQALA GAKAQLTFLR QAADLPEVAT LKSRLAQNAE DDEAVYQLAV QQLARQQYEA
ALDGLLKLFV RNRSYGDGLP HKTLLQVFDL LGGDHPLVTS YRRKLYQAIY