| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3857 |
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| Symbol | |
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| ID | 5106087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4246834 |
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| End bp | 4247949 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640505111 |
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| Product | diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase |
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| Protein accession | YP_001189336 |
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| Protein GI | 146308871 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAGC GCGACCATTT GTTCATGGCG CGCGCCCTGC GGCTGGCGCG CAAAGGCCTT
TACTCCACCC ACCCGAATCC GCGTGTCGGC TGCGTCATCG TGCGTGACGG CGAGATCGTC
GGCGAGGGCT GGCATGCCCG GGCCGGCGAA CCGCACGCCG AGGTGCACGC CCTGCGTCAG
GCCGGCGAGC GCGCGCGCGG TGCCACCGCC TACGTCACCC TGGAACCCTG CAGCCATCAC
GGGCGTACGC CGCCCTGCGC CGATGCGCTG GTCGCCGCCG GGGTCGGCCG GGTGGTCGCA
GCGATGCAGG ACCCCAACCC GCAAGTGGCC GGTCGCGGCC TGCTGCGCCT GGCCAATGCG
GGGATCGAAG TGCTATCCGG TGTACTGGAG GCCGAGGCAC GGGCGCTCAA CGTTGGCTTC
ATCAAGCGCA TGGAAAGCGG CCTGCCATTC GTTCGGGTCA AGTCGGCGAT GAGCCTGGAT
GGCCGCACGG CCATGGCCAG CGGCGAGAGC CAGTGGATCA CCGGGCCGGC GGCGCGTGCC
GAGGTGCAGC GGTTGCGCGC GCAGTCCAGC GTGGTGCTCA GCGGCGCCGA CACCGTGCTG
GCCGACGACG CCCGGCTGAC CGTGCGCCCC GACGAGTTGG GGCTGGGCGC AGAAGCGACG
TTCATGGCCG CCTCGCGGCC GCCGCTGCGG GTGCTGATCG ATGGTCGGTT GCGGGTACCG
CTGAGCAAGG CGTTCTTCCA GGTCGGCCCG GCGCTGGTGG CCACCTGTGC GGCTGCAGCT
GCGCGCGACC GCTACCTGGC CGACGACCAC GAACTGCTCG CCGTGCCGGG TAGCAATGGT
CATGTCGACC TGCGCAAGCT GCTGCAGGAG CTGGCCGGGC GTGGCGTCAA CGAAGTATTG
GTGGAGGCCG GGCCGCGTCT GGCTGGCGCC TTCGCCCGCG CCGGGCTGGT GGACGAGTAC
CGCATCTTCG TTGCGCCCAA ACTGCTGGGT TCCAGTGCTC GGCCGTTGTT CGAGCTGCCG
CTCAACCGCA TGGCCGAGGC GCCGGAGTTG CAGATTGTCG ATATCCGCGC CGTGGGTGAC
GACTGGCAGA TCACCGCGGT GCCCAAGACC AGGTAG
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| Protein sequence | MSERDHLFMA RALRLARKGL YSTHPNPRVG CVIVRDGEIV GEGWHARAGE PHAEVHALRQ
AGERARGATA YVTLEPCSHH GRTPPCADAL VAAGVGRVVA AMQDPNPQVA GRGLLRLANA
GIEVLSGVLE AEARALNVGF IKRMESGLPF VRVKSAMSLD GRTAMASGES QWITGPAARA
EVQRLRAQSS VVLSGADTVL ADDARLTVRP DELGLGAEAT FMAASRPPLR VLIDGRLRVP
LSKAFFQVGP ALVATCAAAA ARDRYLADDH ELLAVPGSNG HVDLRKLLQE LAGRGVNEVL
VEAGPRLAGA FARAGLVDEY RIFVAPKLLG SSARPLFELP LNRMAEAPEL QIVDIRAVGD
DWQITAVPKT R
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