| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3852 |
|---|
| Symbol | |
|---|
| ID | 5106082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4242453 |
|---|
| End bp | 4243406 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640505106 |
|---|
| Product | thiamine monophosphate kinase |
|---|
| Protein accession | YP_001189331 |
|---|
| Protein GI | 146308866 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0611] Thiamine monophosphate kinase |
|---|
| TIGRFAM ID | [TIGR01379] thiamine-monophosphate kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATGAGT TCGAGCTGAT CCGTCGCTAC TTCGCCGCCG CCCGTTGTGC TCAGGGCTGC
GACGGAGTGG TTCTCGGTAT TGGTGATGAC TGCGCGCTGC TGGCGTTGCC CGCCGGTGAA
CAGCTGGCGG TTTCTACCGA CACGCTGGTT GCCGGGGTGC ACTTTCCCCA AGCCTGCGAT
GCCTTTCTTC TCGGTCAGCG CGCGCTGGCC GTTTCCGCCA GCGATCTGGC TGCCATGGGC
GCGACGCCCT TGGCCTTTAC CCTCGCCCTG ACCCTGCCGA GCGCCAATGA AACCTGGCTG
GCCGAGTTCG CGCGCGGCCT GCAGACGATG GCGCAGAGCT GTTCGCTGGC GCTGGTCGGT
GGCGACACCA CGCGCGGTCC GCTGAGCCTG ACGCTGACCG TGTTCGGCCG GGTGCCGAAT
GGACAGGCGC TGCTGCGCAG TGGCGCGCAG GTGGGCGATC TGCTCTGCGT CGGCGGCGAA
CTGGGCGATG CCGCGGGCGC GCTGCCGCTG GTGCTGGGGC AGCGCGAAGC GGCGGCAGAC
ATCAGCGAAG CACTGCTGGC GCGCTACTGG TCGCCGCAGC CGCAGCTGGC TCTGGGGCAG
GCCTTGCGCG GGCGGGCCAC GGCCGCGCTG GATATTTCCG ACGGGCTGCT GGCCGACTGC
GGGCATATCG CCAAGGCTTC ACAGGTGGCC CTTAAGATCG AGCTGGAGCA AGTGCCGCTG
TCTGCAGCGC TGCGCGCCTT CGCCGGCGAG GAGCAGGCGC GGACCTGCGC GCTGGGCGGT
GGCGACGACT ACCGACTGGC CTTTACCCTA CCGCCAGCCC TGCTCGCCGA TCTGCAGGCC
GATTGGCCCG AAATACGGGT GATCGGCCGT GTGCAGGCCG GTACTGGGGT AGAGTTGCTG
GACGCCGCCG GCCAGCCCAT CGAGCCGCCG CGTGGCGGCT ACCAACATTT CTGA
|
|---|
| Protein sequence | MNEFELIRRY FAAARCAQGC DGVVLGIGDD CALLALPAGE QLAVSTDTLV AGVHFPQACD
AFLLGQRALA VSASDLAAMG ATPLAFTLAL TLPSANETWL AEFARGLQTM AQSCSLALVG
GDTTRGPLSL TLTVFGRVPN GQALLRSGAQ VGDLLCVGGE LGDAAGALPL VLGQREAAAD
ISEALLARYW SPQPQLALGQ ALRGRATAAL DISDGLLADC GHIAKASQVA LKIELEQVPL
SAALRAFAGE EQARTCALGG GDDYRLAFTL PPALLADLQA DWPEIRVIGR VQAGTGVELL
DAAGQPIEPP RGGYQHF
|
|---|
| |