| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3841 |
|---|
| Symbol | |
|---|
| ID | 5106071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4229002 |
|---|
| End bp | 4229889 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640505095 |
|---|
| Product | farnesyl-diphosphate synthase |
|---|
| Protein accession | YP_001189320 |
|---|
| Protein GI | 146308855 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.599692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGG CCTACCAGGC GAGCTGCCAG GCACGGGTCG ACGCCGCCCT CGAGCCGCTG
TTCCAGCCTC CCCGTGCCGA GCTGCAGCGC CTGTACGAGG CGATGCGCTA CAGCGTGATG
AACGGCGGCA AGCGGGTACG CCCGCTGCTG GTGTATGCCG CCTGCGAAGC GCTGGATGGC
AATCTCGATC GCGCCGATGG CGCCGCCTGC GCGGTGGAGC TGATTCACGC CTATTCCCTG
GTGCACGACG ACCTGCCGGC GATGGACGAC GACGACCTGC GCCGCGGCCA GCCCACCACT
CACAAGGCCT TCGACGAGGC CAGTGCCATC CTCGCCGGTG ACGGCCTGCA GAGCCTGGCC
TTCGAGGTGC TCGCCGACCG CCGGCGCAAC CCGCAGGACG CCGAAGTGCG TCTGCAGATG
ATCGATGCCC TGAGCAGCGC AGCCGGGCCG GCCGGCATGG TCGGCGGCCA GGCCATCGAC
CTCGGCTCGG TGGGGCAGCA GCTCGACCAG GCGGCGCTGG AAACCATGCA CCGGCACAAG
ACCGGCGCGC TGATCGAAGC CAGCGTACTG CTCGGCGCCC TGGCCAGCGG CAACGCCGAC
GAACTCAGCC TCAAGGCCCT GCTGCAGTAC GCCCGCGCCG TCGGTCTGGC CTTCCAGGTG
CAGGACGACA TTCTCGACGT GGAGAGCGAC ACCGCCACCC TGGGCAAGAC CCAGGGCAAG
GACGAGGCCA ACGACAAGCC CACCTACCCC GCCCTGCTCG GCCTCGACGC AGCCAAGGAC
TATGCCCTGG AACTGCGCGA CCAGGCCCTG CACGTGCTGC GCCCCTTCGG CAGCCAGGCC
GAGCCGCTGC GCGAGCTGGC GCGTTATATC GTCGAGCGGC GCAGCTAG
|
|---|
| Protein sequence | MIKAYQASCQ ARVDAALEPL FQPPRAELQR LYEAMRYSVM NGGKRVRPLL VYAACEALDG
NLDRADGAAC AVELIHAYSL VHDDLPAMDD DDLRRGQPTT HKAFDEASAI LAGDGLQSLA
FEVLADRRRN PQDAEVRLQM IDALSSAAGP AGMVGGQAID LGSVGQQLDQ AALETMHRHK
TGALIEASVL LGALASGNAD ELSLKALLQY ARAVGLAFQV QDDILDVESD TATLGKTQGK
DEANDKPTYP ALLGLDAAKD YALELRDQAL HVLRPFGSQA EPLRELARYI VERRS
|
|---|
| |