| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3745 |
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| Symbol | |
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| ID | 5105740 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4128460 |
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| End bp | 4129080 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640505000 |
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| Product | ribosomal large subunit pseudouridine synthase E |
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| Protein accession | YP_001189225 |
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| Protein GI | 146308760 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 51 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCGCC CTCGTCCTCC TGCCAGTCGC CGTCCCGCTA CCCCGCACCG TGTGGCCAAG
GCGCCGCCCG CGCAGCCACG GCTGATCCTG CTGAACAAGC CGTTCGACGT GCTGACCCAG
TTCAACGACG AGCAGGGCCG CGCCACCCTC AAGGATTTCG TCGAGGTGCC CGGCGTCTAC
CCGGCCGGGC GCCTGGATCG CGACAGCGAA GGCCTGCTGC TGCTGACCAA CGACGGCCGC
CTGCAGGCGC GCATCGCCGA CCCCAGGCAC AAGCTGGCGA AGACCTACTG GGTGCAGGTG
GAGGGCGAAC CGAGCGAGGC GCAGCTGCAG CAGTTGCGCG ATGGCGTGAC GCTCAATGAC
GGCCCGACGC TGCCAGCCGA GGCGCGGCTA CTGGACGAAC CGCAGCTGTG GGACAGACAT
CCGCCGGTGC GCTTTCGCAA GAGCGTGCCG ACCAGTTGGC TGGAGCTGGT GATCCGCGAG
GGGCGCAACC GCCAGGTGCG GCGCATGACC GCCGCGGTGG GCCTGCCCAC GCTGCGCCTG
GTGCGTGTGG CCATCGGCCC CTGGGCATTG AATGGTCTGC AGCCTGGTCA ATGGTGCGAG
GTCCCGGCGT TATTGCCATA G
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| Protein sequence | MSRPRPPASR RPATPHRVAK APPAQPRLIL LNKPFDVLTQ FNDEQGRATL KDFVEVPGVY
PAGRLDRDSE GLLLLTNDGR LQARIADPRH KLAKTYWVQV EGEPSEAQLQ QLRDGVTLND
GPTLPAEARL LDEPQLWDRH PPVRFRKSVP TSWLELVIRE GRNRQVRRMT AAVGLPTLRL
VRVAIGPWAL NGLQPGQWCE VPALLP
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