Gene Pmen_3734 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3734 
Symbol 
ID5105729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4117970 
End bp4118713 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content68% 
IMG OID640504989 
Productextracellular solute-binding protein 
Protein accessionYP_001189214 
Protein GI146308749 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCAGCT GGCTGTTCGC ACTGCTGATG CTGGCGCCGC TGTGCCGGGC CGGCGAAGCC 
GAGCCCCTGC GGGTGATGAC CGACCTCTGG CCGCCCTTTC GCATGGAAGG CGAGAACGGC
CGCTTGCAGG GGCTGGACAT CGATCTGCTC GACGAGCTGT CACGCCGCAC CGGGCTGCGC
TTCGAAGTGG AGCGGGCACC CTGGGCGCGC GGCCTGGCAG CGCTGGAGCA GGGCAAGGCC
GATCTGATGA CCGGGCTGGC CAGAACGGCG GAGCGCGAGC GCTATATCCA GTACCTGAAC
GCGCCGTACT ACGCCTGCTC GCCGCGCTTC TACGCCAGCC CGACGCTGGC CACGCGCCTG
GACGACTACG AGAAACTTCG CGGGCTGCGC ATCGGCCATG TGCTGGAGTC GGTGTACTTC
CAGCCGTTCG ACGGCGATCA GAAGCTGAAC AAGGTCGGTG TCAGCAACGA GAGCCAACTG
CTTCAGATGC TCGCACGCGG CCGCATCGAC GTGCTGGTGG GCACCGACTG CCAGGTCGAC
TACGCCCTGC TCGCCCCCGA GCTGGCCGGG CGCATCGTCA AGGCGGCCTA CCGTCCCGAG
GCACGCACCG AACTCTACAT CGGCTTTTCC CGCCAGCGCC TGCAACGCCT GCCGCAGCTC
TCGGCTGCGC TGGAGACCCT GCTACGCGAG GGCTGGATCG CGCGAGCCGC GCTGCGTTAC
CAGCGAGTGG TGGCGCGTCA GTAG
 
Protein sequence
MRSWLFALLM LAPLCRAGEA EPLRVMTDLW PPFRMEGENG RLQGLDIDLL DELSRRTGLR 
FEVERAPWAR GLAALEQGKA DLMTGLARTA ERERYIQYLN APYYACSPRF YASPTLATRL
DDYEKLRGLR IGHVLESVYF QPFDGDQKLN KVGVSNESQL LQMLARGRID VLVGTDCQVD
YALLAPELAG RIVKAAYRPE ARTELYIGFS RQRLQRLPQL SAALETLLRE GWIARAALRY
QRVVARQ