| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3729 |
|---|
| Symbol | |
|---|
| ID | 5105724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4115090 |
|---|
| End bp | 4115689 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640504984 |
|---|
| Product | DNA polymerase III, epsilon subunit |
|---|
| Protein accession | YP_001189209 |
|---|
| Protein GI | 146308744 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
|---|
| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAATCCA TTGCAGTAAT CGATTTCGAA ACCACCGGCG TGTCGCCGAG CCAGGCGCGC
GCTACCGAGA TCGGCGTGGC GATCATCGAG GACGGGCGCA TCGTCGACCG TTACCAGAGC
CTGATGAACA GCGGCGCCTG GGTGCCGCCG TTCATCGAGC AGCTCACCGG CATCAGCAAC
GCCATGCTGC GCAAGGCGCC ACCGTCGGAG CAGGTGATGA ACGAGGTGGC CGACTTCATC
GGCGAGCGGC CGCTGCTGGC GCACAACGCG TCCTTCGACC AGAAGTTCTG GGACGCCGAA
CTGGCGCGCG TGCGCCGGCG TCGTTCGCAG CCCTTCGCCT GTTCGCTGCT GCTCTCACGC
AGGCTGCTGC CGGAGGCGCC GAGTCACAAG CTGGGCAACC TCAATGCCTG GGCCGGCCTG
CCGGATACCG GCCGTGCCCA CCGCGCCCTG GCCGACGCCG AGATGGCGGC GAACCTCACC
CTGCATCTGT TCGGCCTGCT GCGCGAGCGT CATGGCCGGT ACCAGGCCGA CCATGCCTTT
CTCTGCCAGC TGCAGAGTCT CTCGGCCGCC AAGGTGCGGG CGCTGCTGGC CACGGCTTAG
|
|---|
| Protein sequence | MESIAVIDFE TTGVSPSQAR ATEIGVAIIE DGRIVDRYQS LMNSGAWVPP FIEQLTGISN
AMLRKAPPSE QVMNEVADFI GERPLLAHNA SFDQKFWDAE LARVRRRRSQ PFACSLLLSR
RLLPEAPSHK LGNLNAWAGL PDTGRAHRAL ADAEMAANLT LHLFGLLRER HGRYQADHAF
LCQLQSLSAA KVRALLATA
|
|---|
| |