| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3728 |
|---|
| Symbol | |
|---|
| ID | 5105723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4113621 |
|---|
| End bp | 4114964 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640504983 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001189208 |
|---|
| Protein GI | 146308743 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.201471 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTCG CCTCCCTCGG TTTGATCGAA CCGCTGCTGC GCACCCTCAC CGAACTCGAC
TACCAGACCC CGACCCCGGT ACAGAGCCAG GCCATCCCGG CCATGCTCAA GGGCCGTGAT
CTGATGGCCG CGGCGCAGAC CGGCACCGGC AAGACCGCCG GTTTCGCCCT GCCGCTGCTG
CAGCGCCTGA CCCTGGAAGG TCCGCAGGTG GCCAGCAACG CGGTGCGTGC GCTGGTGCTG
GTGCCGACCC GCGAGCTGGC CGAACAGGTG CTGCAGAGCT TCCAGGCCTA CGGCCAGCAC
CTGCCGCTGA GCAGCTACGC GGTGTACGGC GGCGTCAGCA TCAACCCGCA GATGATGAAG
CTGCGCAAGG GCGTCGACGT GCTGGTGGCC ACGCCGGGGC GGCTGCTCGA CCTGTACCGG
CAGAACGCGG TCAAGTTCGC CCAGCTGCAG ACCCTGGTGC TGGACGAGGC CGACCGCATG
CTCGATCTGG GCTTCGCCCG TGAGCTGGAC GAGCTGTTCA GCGCGCTGCC GAAAAGGCGC
CAGACCCTGC TGTTCTCCGC CACCTTCTCC GACGTGATTC GGCAGATGGC CGGCGAGCTG
CTGCGCGATC CCGTGTCGGT GGAGGTCAGC CCGCGCAATG CGGCGGCCAA GAGCGTCAAG
CAGTGGCTGA TCCCGGTGGA CAAGAAGCGC AAGAGCGAGC TGTTTCTGCA CCTGTTGCAG
GAAAAGCGCT GGGGCCAGGT GCTGGTGTTC GCCAAGACGC GCAAGGGCGT CGATCAGCTC
GAGCAGGAGC TGCTGGCCAT GGGCGTGTCC GCCGACTCGA TCCACGGCGA CAAGCCGCAG
CCGAGCCGCC TGCGCGCGCT GGAGCGCTTC AAGGCCGGTG AGGTGCAGAT TCTGGTGGCC
ACCGACGTGG CCGCGCGTGG CCTGGATATC GACGATCTGC CGCTGGTGGT CAACCTCGAC
CTGCCGATCA ACGCCGAAGA CTACGTGCAC CGCATCGGCC GTACCGGCCG TGCCGGCAGC
ACCGGTGAGG CGGTCTCGCT GGTGTGCGCC GACGAGGTGG AGCTGCTGGC TGCCATCGAG
CGGCTGATCC GCCAGGTGCT GCCGCGCCGC GAGGAACCGG ACTTCATCCC CGATCACCGG
GTGCCGCAGA CCACCATCGA CGGCCAGGTG CTGAAAAAAC CGAAGAAGCC CAAGCAGAAG
CTGATCCCCG GCACCGCCAA GCCTGCCGGC AAGGGCAATA TCCACCTCGG TCGCTGGTTC
GAGGAAGAGG ATGCCAAGCC GAAAGCCAAG GCGGTGCGCA AGGTGCCGAG CTTCGGCAGC
AAGCCCAAGG GTGGCAAGAA GTAG
|
|---|
| Protein sequence | MTFASLGLIE PLLRTLTELD YQTPTPVQSQ AIPAMLKGRD LMAAAQTGTG KTAGFALPLL
QRLTLEGPQV ASNAVRALVL VPTRELAEQV LQSFQAYGQH LPLSSYAVYG GVSINPQMMK
LRKGVDVLVA TPGRLLDLYR QNAVKFAQLQ TLVLDEADRM LDLGFARELD ELFSALPKRR
QTLLFSATFS DVIRQMAGEL LRDPVSVEVS PRNAAAKSVK QWLIPVDKKR KSELFLHLLQ
EKRWGQVLVF AKTRKGVDQL EQELLAMGVS ADSIHGDKPQ PSRLRALERF KAGEVQILVA
TDVAARGLDI DDLPLVVNLD LPINAEDYVH RIGRTGRAGS TGEAVSLVCA DEVELLAAIE
RLIRQVLPRR EEPDFIPDHR VPQTTIDGQV LKKPKKPKQK LIPGTAKPAG KGNIHLGRWF
EEEDAKPKAK AVRKVPSFGS KPKGGKK
|
|---|
| |