| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3719 |
|---|
| Symbol | |
|---|
| ID | 5105714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4105000 |
|---|
| End bp | 4105869 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640504974 |
|---|
| Product | acyl-CoA thioesterase II |
|---|
| Protein accession | YP_001189199 |
|---|
| Protein GI | 146308734 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1946] Acyl-CoA thioesterase |
|---|
| TIGRFAM ID | [TIGR00189] acyl-CoA thioesterase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAGG TTCTCGATGA TCTGGTGGCG CTGCTCAGCC TGGAGCCGAT CGAGGAAAAC
CTGTTCCGTG GCCGCAGCCA GGATCTCGGT TTTCGCCAGC TGTTCGGCGG CCAGGTGCTT
GGCCAGTGCA TCTCCGCCGC CAGCCAGACG GTCGAGGAGG CGCGCCACGT GCACTCCATG
CACGGCTACT TCCTGCGCCC GGGCGATGCC AGCCTGCCGG TGGTCTATCA GGTCGAGCGC
ACCCGCGATG GCGGCAGCTT CAGCACCCGC CGAGTGGTGG CGGTGCAGAA GGGCAAGCCG
ATTTTCTTCT GCAGTGCTTC GTTTCAGTAC GACGAGGAAG GCTTCCACCA CCAGAGCGAG
ATGCCGGATG TGCCCGGCCC CGAGAACCTG AAATCGGAGA CCGAGCTGGC GCGCATGGTG
GCGCCGATGA TTCCCGAGCG CATGCGCGAG CGTGCGATCA GCGACAAGCC CATCGAGATC
CGCCCGGTCA CCCTGATCAA CCCTTTCGCG CCGCAGCCCT GCGAGCCGGT CAAGTACGTG
TGGTTCCGCG CCGCCGGCGA GCTGCCGGAC GACCCGCAGC TGCACAAGTA CCTGCTGGCC
TACGCCAGCG ACTTCAACCT GCTGACCACC TCGATGCAGC CGCATGGCGT GTCGGTGTTC
CAGAAGTTCA TGCAGGTGGC CAGCCTCGAC CACTCGCTGT GGTTCCACCG CAACCTGCGC
ATGGACGACT GGCTGCTGTA CGCTATGGAC AGCCCCTGGG CCGGCAATGC CCGCGGCTTC
TCCCGTGCCA GCATCTACAA CCGCCAGGGC GAACTGGTGG CCTCCGCCGC CCAGGAGGGC
CTGACCCGCG TGCGTGAGGA CTGGAAGTGA
|
|---|
| Protein sequence | MTQVLDDLVA LLSLEPIEEN LFRGRSQDLG FRQLFGGQVL GQCISAASQT VEEARHVHSM
HGYFLRPGDA SLPVVYQVER TRDGGSFSTR RVVAVQKGKP IFFCSASFQY DEEGFHHQSE
MPDVPGPENL KSETELARMV APMIPERMRE RAISDKPIEI RPVTLINPFA PQPCEPVKYV
WFRAAGELPD DPQLHKYLLA YASDFNLLTT SMQPHGVSVF QKFMQVASLD HSLWFHRNLR
MDDWLLYAMD SPWAGNARGF SRASIYNRQG ELVASAAQEG LTRVREDWK
|
|---|
| |