| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3716 |
|---|
| Symbol | |
|---|
| ID | 5105711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4099708 |
|---|
| End bp | 4102851 |
|---|
| Gene Length | 3144 bp |
|---|
| Protein Length | 1047 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640504971 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_001189196 |
|---|
| Protein GI | 146308731 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGAT TCTTTATCGA CCGGCCCATC TTCGCCTGGG TGATCGCCCT GGTGATCATG
CTGGCCGGCG GCCTGTCCAT CCTCAAACTG CCGATCAACC AGTACCCGAG CATCGCGCCA
CCCGCCGTTG CCATCCAGGT CAGCTACCCG GGCGCCTCGG CGCAGACGGT GCAGGACACC
GTGGTACAGG TGATCGAACA GCAGCTCAAC GGCCTCGATG GCCTGCGCTA TGTCAGCTCG
TCGAGCAACT CCGACGGCAG CATGGAAATC ATCGTGACCT TCGAGCAGGG GGTTAACCCG
GATATCGCCC AGGTCCAGGT GCAGAACAAG CTGCAGCTGG CCACTCCATT GCTGCCGCAG
GAAGTGCAGC AACAGGGCAT CCGCGTGACC AAGTCGGTGC GCAACTTCCT CATGGTCATC
GGCGTGGTGT CGAAAGACGG CAGCATGACC CGTGAGGACC TGTCGGACTA CATCGTCTCC
AACCTGCAGG ACCCGATCTC GCGGACCAAG GGCGTCGGCG ACTTCCAGGT GTTCGGCGCG
CAGTACGCCA TGCGCATCTG GCTCGACCCG GCCAAGCTCA ATGCCTTCCA GCTGACCCCG
GTGGACGTGC GCAGCGCCAT CCAGGCGCAG AACGTGCAGA TCTCCTCCGG CCAGTTCGGC
GGCCTGCCGG CCGCGCCGGG CAACCAGCTC AACGCCACCA TCATCGGCAA GACCCGCCTG
CAGAGCCCGG AAGAATTCCG CAAGATCCTG CTCAAGGTGC AGGCCGACGG TTCCCAGGTG
CGCCTGGACG ACGTCGCCAA GGTGGAGCTG GGTGGCGAGA ACTACGCCAT CAACGCGCAG
TTCAACGGCC TGCCCGCCTC CGGCCTGGCG ATTCGCCTGG CCACCGGCGC CAACGCCCTG
GACACCGCCA AGGCGGTGCG CGAAACCATC GCCACCCTGG AGCCGTTCTT CCCGGCGGGT
ATGGAAGTGG TCTTCCCCTA CGACACCACG CCGGTGATCT CGGCCTCCAT CGAAGGGGTG
GTGCACACCC TGTTCGAAGC CATCGTGCTG GTGTTCCTGG TGATGTTCCT GTTCCTGCAG
AACCTGCGCG CCACCATCAT CCCGACCATG GCGGTGCCGG TGGTGCTGCT CGGCACCTTC
GGCGTACTCG CCGCGTTCGG CTTCTCCATC AATACCCTGA CCATGTTCGC CATGGTCCTG
GCCATCGGCC TGCTGGTGGA CGACGCCATC GTGGTGGTGG AGAACGTCGA GCGGGTGATG
CGCGAGGACG GCCTGTCGCC CAAGGAAGCG ACGCGCAAGT CCATGGGCCA GATCCAGGGC
GCGCTGATCG GCATCGCCCT GGTGCTGTCG GCGGTGTTCC TGCCGATGGC CTTCTTCGGC
GGCTCCACCG GGGTGATCTA CCGGCAGTTC TCCATCACCA TCGTCTCGGC CATGGCCCTG
TCGGTGCTGG TGGCGCTGAT CTTCACCCCG GCGCTGTGCG CCACCCTGCT CAAGCCCATC
GACGGCGAGC ATCACGAAGC CAAGCGCGGC TTCTTCGGCT GGTTCAACCG CACGTTCGAC
CGCACCAGCA ATGCCTACCA GCGCGGTGTG GCCGGCATGC TCAAGCGCAA GGCGCCGTAC
CTGCTGCTGT ACCTCGCCAT CGTCGCGGTG ATGGCCTTTA TGTTCAGCCG CATCCCCACC
GCCTTCCTCC CCGAGGAAGA CCAGGGCGTG CTGTTCGCCC AGGTGCAGAC GCCGTCCGGC
TCCAGTGCCG AGCGTACCCA GGTGGTGGTC GACGAGATGC GCCAGTACCT GCTGGAAGAA
GAAGCGAGCA CGGTCAAGTC GGTGTTCACC GTCACCGGCT TCAACTTCGC CGGCCGCGGC
CAGAGCTCCG GCATGGCCTT TATCATGCTC AAGCCCTGGG GTGAACGTCC GGGTGAGGAG
AATGGCGTGG CGGCGCTGGC GCAACGTGCG CAGCGACATT TCTTCAGCTT CCGCGATGCC
ATGGTGTTCG CCTTCGCTCC GCCCGCGGTG ATGGAGATGG GTAACGCCAC CGGCTTCAAC
TTCTTCCTGC AGGACCAGGC CGGCGTCGGC CATCAGGTGA TGAACGAGGC ACGCGACAAG
TTCCTGCAGC TGGCCAACCA GCATCCGGTG CTCGACAGCG TGCGCGCCAA CGGTCTGCGC
GACGAGGCGC AGTATCAGCT GCTGATCGAC GACGAGCGCG CCCGCGCCCT CGGCCTGTCG
CTGGCGGACA TCAACAGCAC CCTGTCGATC GCCTGGGGCG CCAGCTACGT CAACGACTTC
ATTGATCGCG GCCGGGTAAA GAAGGTGTAT CTGCAGGGCA CGGCGCAATC GCGCATGAGC
CCGGAGGACC TGAACAAGTG GTACGTGCGC AACGACCAGG GCCGCATGGT GCCGTTCAGC
GCCTTCGCCA GCGGCGAGTG GACCTACGGC GCGCCCAAGC TGGCGCGTTA CAACGGCGTC
TCGGCAGTGG AAATCCTCGG TGCGCCAGCC CCCGGCTACA GCACCGGTGA TGCCATGGCC
GCGGTGGAGG AAATCGCCTC GCAGCTGCCG CAGGGCGTCG GCTACTCCTG GACCGGGCTG
TCCTACGAGG AGCGCCTGGC AGGCTCGCAG ACCACTGCGC TGTTCGTGAT CTCCGCCATC
GTGGTGTTCC TCTGCCTGGC AGCGCTGTAC GAGAGCTGGT CGATCCCGTT CTCGGTGATG
CTGGTGGTGC CGCTGGGGAT CATCGGTGCG CTGCTGTTCA CCGAACTGCG TGGGCTGTCC
AACGACGTGT TCTTCAAGGT CGGCCTGCTC ACCACCATCG GTCTCTCGGC GCGGAACGCG
ATCCTTATCG TCGAGTTCGC CAAGGCGCAG TACGAACAGG GCATGGGCCT GGCCGAAGCC
GCCATCGAGG CCTGCCGCAT GCGTCTGCGC CCCATCGTGA TGACCTCGCT GGCGTTCATC
CTCGGCTGTC TGCCGCTGGC CATCGCCAGT GGTGCCGGCG CCGGCAGCAA GCACGCCATC
GGCACCGGGG TGATCGGCGG CATGCTCAGC GCCCTGGTGC TGGCGATCTT CTGGATTCCG
CTGTTCTACG TGGTGGTCTG CTCGCTGTTC GAGAAGAAGA GAAGCGAGCC GACCGTTGAA
AACGAGAAGG AGGCACTGCA ATGA
|
|---|
| Protein sequence | MSRFFIDRPI FAWVIALVIM LAGGLSILKL PINQYPSIAP PAVAIQVSYP GASAQTVQDT
VVQVIEQQLN GLDGLRYVSS SSNSDGSMEI IVTFEQGVNP DIAQVQVQNK LQLATPLLPQ
EVQQQGIRVT KSVRNFLMVI GVVSKDGSMT REDLSDYIVS NLQDPISRTK GVGDFQVFGA
QYAMRIWLDP AKLNAFQLTP VDVRSAIQAQ NVQISSGQFG GLPAAPGNQL NATIIGKTRL
QSPEEFRKIL LKVQADGSQV RLDDVAKVEL GGENYAINAQ FNGLPASGLA IRLATGANAL
DTAKAVRETI ATLEPFFPAG MEVVFPYDTT PVISASIEGV VHTLFEAIVL VFLVMFLFLQ
NLRATIIPTM AVPVVLLGTF GVLAAFGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
REDGLSPKEA TRKSMGQIQG ALIGIALVLS AVFLPMAFFG GSTGVIYRQF SITIVSAMAL
SVLVALIFTP ALCATLLKPI DGEHHEAKRG FFGWFNRTFD RTSNAYQRGV AGMLKRKAPY
LLLYLAIVAV MAFMFSRIPT AFLPEEDQGV LFAQVQTPSG SSAERTQVVV DEMRQYLLEE
EASTVKSVFT VTGFNFAGRG QSSGMAFIML KPWGERPGEE NGVAALAQRA QRHFFSFRDA
MVFAFAPPAV MEMGNATGFN FFLQDQAGVG HQVMNEARDK FLQLANQHPV LDSVRANGLR
DEAQYQLLID DERARALGLS LADINSTLSI AWGASYVNDF IDRGRVKKVY LQGTAQSRMS
PEDLNKWYVR NDQGRMVPFS AFASGEWTYG APKLARYNGV SAVEILGAPA PGYSTGDAMA
AVEEIASQLP QGVGYSWTGL SYEERLAGSQ TTALFVISAI VVFLCLAALY ESWSIPFSVM
LVVPLGIIGA LLFTELRGLS NDVFFKVGLL TTIGLSARNA ILIVEFAKAQ YEQGMGLAEA
AIEACRMRLR PIVMTSLAFI LGCLPLAIAS GAGAGSKHAI GTGVIGGMLS ALVLAIFWIP
LFYVVVCSLF EKKRSEPTVE NEKEALQ
|
|---|
| |