| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3699 |
|---|
| Symbol | |
|---|
| ID | 5110160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4084002 |
|---|
| End bp | 4084664 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640504954 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001189179 |
|---|
| Protein GI | 146308714 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTCG AAGTCCCCGC CCATAGCGCC AGCGGCAAGC CCGCCGGACG CATCCGCCAG
AAGAACGAAG AAGCCATCAT CCAAGCCGCC GAAGAAGAAT TCGCCCGCCA CGGCTTCAAG
GGCACCAGCA TGAACACCAT CGCGCAGAAC GTCGGCCTGC CCAAGGCCAA CCTGCACTAC
TACTTCAACA ACAAGCTGGG CCTGTACCTG GCGGTGCTCG GCAACATCCT CGAACTGTGG
GACAGCACCT TCAACACCCT GAGCGTCGAC GACGACCCGG CCGAGGCGCT GGCGCGCTAC
ATCCGCGCCA AGATGGAGTT CTCCCGCCGT CAGCCGAAGG CTTCGCGCAT CTTCGCCATG
GAAGTGATCA GCGGCGGCGA CTGCCTGTCG CAGTACTTCA ACCAGAACTA CCTGGACTGG
TTCCGCGGCC GCGCCGCGGT GTTCGACGCC TGGATCGCCG CCGGCAAGAT GGACCCGGTC
GACCCGGTGC ACCTGATCTT CCTGCTGTGG GGCAGCACCC AGCACTACGC CGACTTCGCC
TCGCAGATCT GCCGCGTCAC CGGCCGCTCG CGTCTGACCA AACAGGACTT CGAAGCCGCC
GGCGACAACC TGATCCACAT CATTCTCAAG GGCTGCGGCC TGACGCCGCC CGCCAAGCCC
TGA
|
|---|
| Protein sequence | MTFEVPAHSA SGKPAGRIRQ KNEEAIIQAA EEEFARHGFK GTSMNTIAQN VGLPKANLHY
YFNNKLGLYL AVLGNILELW DSTFNTLSVD DDPAEALARY IRAKMEFSRR QPKASRIFAM
EVISGGDCLS QYFNQNYLDW FRGRAAVFDA WIAAGKMDPV DPVHLIFLLW GSTQHYADFA
SQICRVTGRS RLTKQDFEAA GDNLIHIILK GCGLTPPAKP
|
|---|
| |