| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3631 |
|---|
| Symbol | |
|---|
| ID | 5110092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4005514 |
|---|
| End bp | 4006917 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640504886 |
|---|
| Product | sodium:neurotransmitter symporter |
|---|
| Protein accession | YP_001189111 |
|---|
| Protein GI | 146308646 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0733] Na+-dependent transporters of the SNF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.693771 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGCG ACAAAGTTTC GATTCATGGT GCCTGGGCCA GCCGCTGGGT GTTCATTCTG
GCGGCCACCG GCTCGGCGGT CGGCCTGGGC AATATCTGGA AGTTTCCCTA CATGACCGGC
GTCTACGGCG GTGGTGCGTT CGTGGTCATG TACCTGTTCT GCATCGCGCT GGTCGGCGTG
CCGATCATGC TGGCGGAAAC CCTGATCGGC CGTCGCGGCC GGCAGAGCCC GGTCAACGCG
ATGAAGAGCC TGGCGGCCGA GGCCGGGGCG TCCAGGCACT GGTCGCTGGC GGCGCTGATC
GGCATGGTCG CGGCGCTGTT GATCCTGTCC TTCTACAGCG TGGTGGCGGG CTGGTCGCTC
GATTACATCC TCGGTATGGG GCGCGGCGAT TTCACCGGCA TCAGTGGCGA TGGTGCCGGC
GCGGCGTTCG GCGGGCTGAC CTCCGATCCC TGGCGACTGA CCCTGTGGCA CAGCCTGTTC
ATGCTGGTCA CTGCCTTCGT CATCGCCAGG GGCGTGGTGG CCGGTCTGGA GCGCAGCCTG
CGCATCATGA TGCCGCTGCT GTTCGTGCTG CTGCTGGTAC TGCTGGGCTA CAGCTTCACC
ACCGGGCATT TCCGCGAAGG CTTCGATTTC CTCTTCCATT TCGATCCGAG CAAGGTTCAG
GACGGCATTC TCGCCGCCAT GGGCCATGCC TTCTTCACCC TGAGCGTCGG CGTCGGCTCG
ATCATGGTCT ACGGCGCCTA CATGCCGAAG AAGGCCTCGA TCGGCGCCAC CGTGCTCACC
GTCGGCCTGC TCGATACCCT GGTGGCGCTG ACCGCGGGGC TGGCCCTGTT CCCCATCGTC
TTCGCCGCGG GTCTGGAGCC GGGCGGTGGT CCGGGGCTGA TGTTCGTGAC CCTGCCGATC
GCGTTCGGCA ATATCGCCTT CGGTCAGGTC ATGGGGCTGA TCTTCTTCGT GCTGGTGGCC
GTAGCCGCCT GGAGCTCGTC GATCTCCATG CTGGAGCCGG CCGTGGCCTA CTTCGTCGAG
AAGACCGGGC GCAGCCGTGC CAAGGTAACC GCCGCGCTGG CACTGGTGTG CTGGTTGCTG
GGCATGGGGA CGGTGCTGTC GTTCAATCTG TGGGCCGAGG CCAAGTTCTT CGTCTTCGCC
GATGATGGTT TCCACCTGTT GCAGTGGGGC GCCGAGGGCG GCAAGACCTT CTTCGACAGC
ATCGACTACC TCACCAGCCG CATCCTGCTG CCACTGGGTG GCCTGTCCTT CGCGCTGTTC
GCCGGTTGGG TGCTGAGCCG CGACGCGGTG CGCGAAGAGC TGGCGATCAG AAGCCCGCTG
CTGTTCAATC TGGCCCTCTG GCTGATTCGC GTCGTGGCGC CGATCGGCGT GCTGATCGTG
TTCATCGCGG AGCTGAGCAA GTAA
|
|---|
| Protein sequence | MASDKVSIHG AWASRWVFIL AATGSAVGLG NIWKFPYMTG VYGGGAFVVM YLFCIALVGV
PIMLAETLIG RRGRQSPVNA MKSLAAEAGA SRHWSLAALI GMVAALLILS FYSVVAGWSL
DYILGMGRGD FTGISGDGAG AAFGGLTSDP WRLTLWHSLF MLVTAFVIAR GVVAGLERSL
RIMMPLLFVL LLVLLGYSFT TGHFREGFDF LFHFDPSKVQ DGILAAMGHA FFTLSVGVGS
IMVYGAYMPK KASIGATVLT VGLLDTLVAL TAGLALFPIV FAAGLEPGGG PGLMFVTLPI
AFGNIAFGQV MGLIFFVLVA VAAWSSSISM LEPAVAYFVE KTGRSRAKVT AALALVCWLL
GMGTVLSFNL WAEAKFFVFA DDGFHLLQWG AEGGKTFFDS IDYLTSRILL PLGGLSFALF
AGWVLSRDAV REELAIRSPL LFNLALWLIR VVAPIGVLIV FIAELSK
|
|---|
| |