Gene Pmen_3617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3617 
Symbol 
ID5106164 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3991154 
End bp3991465 
Gene Length312 bp 
Protein Length103 aa 
Translation table11 
GC content59% 
IMG OID640504872 
Producthypothetical protein 
Protein accessionYP_001189097 
Protein GI146308632 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1534] Predicted RNA-binding protein containing KH domain, possibly ribosomal protein 
TIGRFAM ID[TIGR00253] putative RNA-binding protein, YhbY family 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCTCA CTCAAGAGCA GAAGAAACAA TTCAAATCTA TCGGCCACCA CCTGAAACCT 
GTATTGATCG TGGCGGACAA TGGTTTGACC GAGGGCGTGC TGGCCGAACT GGACCGCGCA
CTCAACGACC ACGAGCTGAT CAAGGTACAG CTGCGCCTCG CCGAACGCGA GGATCGTCAG
GCCGCCATCA CCGCCCTGTG CGAAGCCGGC CGCGCCGAAC TGGTGCAGTC GATCGGCAAG
GTCGCCCTGC TCTATCGCAA GAACCCCAAG CCCAATCGCA ACCTGTCCAA CGTGATTCGT
TATCAGGGCT GA
 
Protein sequence
MPLTQEQKKQ FKSIGHHLKP VLIVADNGLT EGVLAELDRA LNDHELIKVQ LRLAEREDRQ 
AAITALCEAG RAELVQSIGK VALLYRKNPK PNRNLSNVIR YQG