| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3615 |
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| Symbol | |
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| ID | 5106162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3988354 |
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| End bp | 3990276 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640504870 |
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| Product | membrane protease FtsH catalytic subunit |
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| Protein accession | YP_001189095 |
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| Protein GI | 146308630 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0465] ATP-dependent Zn proteases |
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| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0280177 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAACGACA TGGCAAAGAA TCTGATCCTG TGGCTGATCA TCGCGGCGGT ACTGGTTACC
GTGATGAACA ACTTCTCCAG CCCGAGCGAG CCGCAGACCC TGAGCTACTC GCAATTCATC
GAGCAGGTGA AGGAAGGGCG CGTCGAGCGC GTCACCGTCG ATGGTTACGT GATCACCGGC
AAGCGCACCG ACGGCGAAGG CTTCAAGACC ATCCGCCCGG CGATTCAGGA CGGTGGCCTG
ATCGGTGACC TGATCGACAA CAACGTGGTC ATCGAAGGCA AGCAGCCCGA GCAGCAGAGC
ATCTGGACCC AACTGCTGGT CGCCAGCTTC CCGATTCTGG TGATCATCGC CGTCTTCATG
TTCTTCATGC GCCAGATGCA GGGCGGTGCC GGGGGCAAGG GCGGGCCGAT GAGCTTCGGC
AAGTCCAAGG CGCGCCTGCT CTCCGAAGAC CAGGTCAAGA CCACCTTCGC CGACGTCGCC
GGTTGCGACG AGGCCAAGGA AGAAGTCAGC GAGCTGGTGG AATTTCTCCG CGATCCGGGC
AAGTTCCAGC GCCTGGGTGG CCGCATCCCG CGTGGCGTGC TGATGGTCGG CTCGCCGGGT
ACCGGCAAGA CGCTGCTGGC CAAGGCCGTG GCCGGCGAAG CGAAAGTGCC ATTTTTCACC
ATTTCCGGTT CCGATTTCGT CGAGATGTTC GTCGGCGTCG GTGCCAGCCG CGTGCGTGAC
ATGTTCGACC AAGCCAAGAA GCACGCGCCG TGCATCATCT TCATCGACGA GATCGACGCC
GTCGGTCGCC ATCGTGGCGC CGGCATGGGC GGCGGTCACG ACGAGCGTGA GCAGACTCTC
AACCAGCTGC TGGTGGAGAT GGATGGCTTC GAGATGAACG ACGGCATCAT CGTCATCGCC
GCCACCAACC GTCCGGACGT TCTGGACCCG GCGCTGCTGC GTCCCGGCCG CTTCGACCGT
CAGGTGGTGG TCGGCCTGCC GGATATCCGC GGTCGCGAAC AGATTCTGAA AGTGCACATG
CGCAAGGTGC CGATGGGCGA CGACGTTAAT CCGGCGGTCA TCGCCCGTGG TACCCCGGGT
TTCTCCGGCG CCGATCTGGC CAATCTGGTC AACGAAGCCT CGCTGTTCGC CGCTCGTGCC
GGCAAGCGCC TGGTGGAAAT GAAGGAGTTC GAGCTGGCCA AGGACAAGAT CATGATGGGC
GCCGAGCGCA AGACCATGGT CATGTCCGAC AAGGAGAAGC TCAACACCGC TTACCACGAG
GCGGGTCACG CCATCGTCGG TCGCCTGGTG CCCGAGCATG ACCCGGTCTA CAAGGTTTCC
ATCATTCCGC GCGGTCGTGC CCTGGGTGTG ACCATGTTCC TGCCGGAAGA GGATCGTTAC
AGCCTCAGCA AGCGCGCCCT GATCAGTCAG ATCTGCTCGC TGTTCGGTGG CCGTATCGCC
GAGGAAATGA CCCTGGGCTT CGATGGTGTC ACCACCGGCG CTTCCAACGA CATCATGCGC
GCCACGCAGC TGGCCAAGAA CATGGTCACC AAGTGGGGCC TGTCCGAGAA ACTCGGCCCG
CTGATGTATG CCGAAGAAGA GGGCGAAGTG TTCCTCGGTC GTAGCATGGG CAGCCAGCAC
AGCAATGTGT CCGGTGAAAC CGCCAAGCAG ATCGACGAAG AGGTGCGCCG CATCATCGAC
GAGTGCTACG CCACCGCCAA AAAGCTGCTG GTGGAAAACC GCGACAAGCT CGACGCCATG
GCCGAAGCGC TGATGAAGTA CGAAACCATC GACGCCGAGC AGATCGACGA CATCATGAAC
GGTCGCGAGC CGCGCGAACC GCGTGGTTGG GACGGTGGCG GCGACTCCGG TGCCCCACAG
GCCAAGGTCG ACGAGGTTGA TCGTCCCGAG AAGCCCATTG GCGGGCCGGC GGCCGAGCAT
TAA
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| Protein sequence | MNDMAKNLIL WLIIAAVLVT VMNNFSSPSE PQTLSYSQFI EQVKEGRVER VTVDGYVITG
KRTDGEGFKT IRPAIQDGGL IGDLIDNNVV IEGKQPEQQS IWTQLLVASF PILVIIAVFM
FFMRQMQGGA GGKGGPMSFG KSKARLLSED QVKTTFADVA GCDEAKEEVS ELVEFLRDPG
KFQRLGGRIP RGVLMVGSPG TGKTLLAKAV AGEAKVPFFT ISGSDFVEMF VGVGASRVRD
MFDQAKKHAP CIIFIDEIDA VGRHRGAGMG GGHDEREQTL NQLLVEMDGF EMNDGIIVIA
ATNRPDVLDP ALLRPGRFDR QVVVGLPDIR GREQILKVHM RKVPMGDDVN PAVIARGTPG
FSGADLANLV NEASLFAARA GKRLVEMKEF ELAKDKIMMG AERKTMVMSD KEKLNTAYHE
AGHAIVGRLV PEHDPVYKVS IIPRGRALGV TMFLPEEDRY SLSKRALISQ ICSLFGGRIA
EEMTLGFDGV TTGASNDIMR ATQLAKNMVT KWGLSEKLGP LMYAEEEGEV FLGRSMGSQH
SNVSGETAKQ IDEEVRRIID ECYATAKKLL VENRDKLDAM AEALMKYETI DAEQIDDIMN
GREPREPRGW DGGGDSGAPQ AKVDEVDRPE KPIGGPAAEH
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