Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3606 |
Symbol | truB |
ID | 5106153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3978505 |
End bp | 3979425 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640504859 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_001189086 |
Protein GI | 146308621 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.825741 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCGCAGG TCAAACGTAT TCGCCGCAAG GTCGACGGCA TCATCCTGCT CGACAAGCCG CGCGGCTTTA CCTCCAACGC GGCCCTGCAG AAGGTGCGCT GGCTGCTCAA TGCAGAGAAG GCCGGGCATA CCGGCAGCCT CGATCCGCTG GCAACCGGCG TGCTGCCGCT GTGTTTCGGC GAGGCGACCA AGTTCTCCCA GTACCTGCTC GATGCCGACA AGGGCTACGA GACCGTGGCG CAACTGGGCG TGACCACCAC CACCGGCGAC GCCGAAGGTG AGGTGCTCGA GCGACGCCCG GTGACCGTTG GTCGCCCTGA AATCGAGGCC CTGTTGCCGC GTTTTCGTGG AGAAATCAAA CAGATACCTC CAATGTATTC GGCCCTGAAG AAGGACGGCC AGCCGCTGTA CAAGCTGGCC CGTGCAGGCG AAGTAGTGGA GCGCGAAGCG CGTTCTGTTA CTATTGCGCG CCTGGAATTG CTGGCCCTCG AAGGCGAGCA GGCGCGTCTG TCCGTGGACT GCAGCAAGGG GACCTACATT CGTACCCTGG TCGAGGACCT CGGCCAATTG CTCGGTTGTG GCGCACACGT CGCCGAACTG CGTCGAACCA AGGCCGGTCC CTTCGAGCTG GCGCGTACCG TGACCCTGGA AGAGCTGGAG GCGGTGCACG CCGAAGGTGG CAGCGAAGCG CTTGATCGCT TCCTGCAGCC GGTCGACAGC GGTTTGCAGG ATTGGCCGCT GCTGCAGTTT TCCGAGCACA GTGCGTTCTA CTGGTTGCAA GGACAACCGG TACGGGCACC GGAAGCGCCG AAGTTCGGCA TGGTGCGCGT GCAGGATCAC AATGGTCGCT TCATCGGCAT CGGTGAAGTG AGCGACGATG GGCGTATTGC CCCGCGTCGA TTGATTTATA CCGGTGCGTA G
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Protein sequence | MAQVKRIRRK VDGIILLDKP RGFTSNAALQ KVRWLLNAEK AGHTGSLDPL ATGVLPLCFG EATKFSQYLL DADKGYETVA QLGVTTTTGD AEGEVLERRP VTVGRPEIEA LLPRFRGEIK QIPPMYSALK KDGQPLYKLA RAGEVVEREA RSVTIARLEL LALEGEQARL SVDCSKGTYI RTLVEDLGQL LGCGAHVAEL RRTKAGPFEL ARTVTLEELE AVHAEGGSEA LDRFLQPVDS GLQDWPLLQF SEHSAFYWLQ GQPVRAPEAP KFGMVRVQDH NGRFIGIGEV SDDGRIAPRR LIYTGA
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