| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3604 |
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| Symbol | |
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| ID | 5106151 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3975788 |
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| End bp | 3977965 |
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| Gene Length | 2178 bp |
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| Protein Length | 725 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640504857 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_001189084 |
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| Protein GI | 146308619 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0558589 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATCGGG TCCGACTCCC ATGCCGCTTT CAGATTTCCC CCAAAGGCAA CAAAGAGAAG
GAAAACACCG TGAACCCGGT AATCAAACAG TTCAAGTTCG GTCAATCGAC CGTAACCCTC
GAGACCGGCC GCATCGCCCG TCAGGCCAGC GGTGCCGTGC TGGTGACCGT CGACAACGAC
GTCACCGTGC TGGTCACCGT GGTCGGTGCC AAGACCGCCG ACCCGAGCAA GGGCTTCTTC
CCGCTGTCCG TGCACTACCA GGAAAAGACC TACGCTGCCG GCAAGATTCC TGGCGGTTTC
TTCAAGCGTG AAGGCCGTCC GAGCGAGAAG GAAACCCTGA CCTCGCGCCT GATCGACCGT
CCGATCCGCC CGCTGTTCCC CGAAGGTTTC ATGAACGAAG TGCAGGTCGT CTGCACCGTC
GTTTCCACCA GCAAGAAGAC CGATCCGGAC ATCGCTTCGA TGATCGGTAC CTCCGCTGCC
CTGGCCGTTT CCGGCATCCC GTTCAACGGC CCGATCGGTG CCGCCCGCGT GGCCTTCCAC
CCGGACACCG GCTACCTGCT GAACCCGAAC TACGAGCAGC TCAAGGCCTC CAGCCTGGAC
ATGGTCGTCG CCGGTACCGA AACCGCCGTG CTGATGGTGG AATCCGAAGC TGACGAGCTG
ACCGAAGACC AGATGCTCGG CGCCGTGCTG TTCGCCCACC AGGAATTCCA GGCCGTGATC
CAGGCCGTCA AGGAATTCGC TGCCGAAGCT GGCAAGCCGA CCTGGAACTG GCAGGCTCCG
GCCGCCAACA CACCGCTGCT GGACGCCATC CGCAGCCAGT TCGGCGAGGC CATCAGCCAG
GCCTACACCA TCACCATCAA GCAGGATCGC TACAACCGTC TGGATGAGCT GCGTGAGCAG
GTCATCGCTG CCCTGGCCGG CGAAGGCGAA GGCAAGTTCG CTGCCGACGA GGTCAAGGCC
GCTTTCGGTG AGATCGAGTA CCGCACCGTG CGCCAGAACA TCGTCGACGG CAAGCCGCGT
ATCGACGGTC GCGACACCCG CACCGTACGC CCGCTGAAGA TCGAAGTCGG CGTGCTCGAC
AAGACCCACG GCTCGGCGCT GTTCACCCGT GGTGAAACCC AGGCTCTGGT CGTCGCCACC
CTCGGCACCG CCCGCGATGC GCAGCTGCTC GACACCCTGG AAGGCGAGAA GAAAGACCCC
TTCATGCTGC ACTACAACTT CCCGCCGTTC TCGGTCGGTG AGTGTGGCCG CATGGGTGGC
GCCGGTCGCC GCGAAATCGG CCACGGCCGT CTGGCCCGTC GTGGCGTTGC CGCCATGCTG
CCGAAGGACG ACGAGTTCCC CTACACCATC CGCGTGGTGT CGGAGATCAC CGAGTCCAAC
GGTTCTTCCT CCATGGCTTC GGTCTGCGGT GCCTCCCTGG CCCTGATGGA CGCCGGCGTG
CCGATGAAGG CGCCGGTTGC CGGTATCGCC ATGGGTCTGG TGTTGGAGGG CGAGAAATTC
GCCGTTCTGA CCGACATCCT CGGTGACGAA GACCACCTGG GCGACATGGA CTTCAAGGTA
GCCGGTACCG CCAAGGGCGT CACCGCGCTG CAGATGGACA TCAAGATCCA GGGCATCACC
GAAGAGATCA TGGAGCAGGC CCTGGAGCAG GCGCTGGAAG CTCGCCTGAA CATCCTCGGT
CAGATGAACC AGGTCATTTC GCAGTCGCGC ACCGAGCTGT CGGCCAACGC GCCGACCATG
CTGGCGATGA AGATCGATCA GGACAAGATC CGCGACGTCA TCGGCAAGGG TGGTGCCACC
ATCCGCGCGA TCTGCGAAGA GACCAAGGCT TCGATCGACA TCGAAGACGA CGGCTCGATC
AAGATCTTCG GCGAAACCAA GGATGCCGCC GAGGCTGCCA AGCAGCGCGT GCTGGCCATC
ACCGCCGAAG CCGAGATCGG CAAGATCTAC GTCGGCAAGG TCGAGCGCAT CGTCGACTTC
GGCGCCTTCG TCAACATCCT GCCGGGCAAG GACGGTCTGG TGCACATCTC CATGCTGAGC
GATCAGCGCG TGGAGAAGGT CACCGACGTC CTGAAGGAAG GTCAGGAAGT GAAGGTACTG
GTACTGGACG TGGACAACCG CGGCCGTATC AAGCTGTCGA TCAAGGACGT AGCTGCTGCC
GAGGCCTCCG GGGTCTAA
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| Protein sequence | MHRVRLPCRF QISPKGNKEK ENTVNPVIKQ FKFGQSTVTL ETGRIARQAS GAVLVTVDND
VTVLVTVVGA KTADPSKGFF PLSVHYQEKT YAAGKIPGGF FKREGRPSEK ETLTSRLIDR
PIRPLFPEGF MNEVQVVCTV VSTSKKTDPD IASMIGTSAA LAVSGIPFNG PIGAARVAFH
PDTGYLLNPN YEQLKASSLD MVVAGTETAV LMVESEADEL TEDQMLGAVL FAHQEFQAVI
QAVKEFAAEA GKPTWNWQAP AANTPLLDAI RSQFGEAISQ AYTITIKQDR YNRLDELREQ
VIAALAGEGE GKFAADEVKA AFGEIEYRTV RQNIVDGKPR IDGRDTRTVR PLKIEVGVLD
KTHGSALFTR GETQALVVAT LGTARDAQLL DTLEGEKKDP FMLHYNFPPF SVGECGRMGG
AGRREIGHGR LARRGVAAML PKDDEFPYTI RVVSEITESN GSSSMASVCG ASLALMDAGV
PMKAPVAGIA MGLVLEGEKF AVLTDILGDE DHLGDMDFKV AGTAKGVTAL QMDIKIQGIT
EEIMEQALEQ ALEARLNILG QMNQVISQSR TELSANAPTM LAMKIDQDKI RDVIGKGGAT
IRAICEETKA SIDIEDDGSI KIFGETKDAA EAAKQRVLAI TAEAEIGKIY VGKVERIVDF
GAFVNILPGK DGLVHISMLS DQRVEKVTDV LKEGQEVKVL VLDVDNRGRI KLSIKDVAAA
EASGV
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