| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3578 |
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| Symbol | |
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| ID | 5106125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3945272 |
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| End bp | 3946048 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640504831 |
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| Product | cationic amino acid ABC transporter, periplasmic binding protein |
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| Protein accession | YP_001189058 |
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| Protein GI | 146308593 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.930436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.442967 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAA TCGCCTGGTT GGGCGCCATT GCCCTGAGCC TGATCGCTTC CAGCCCCTTC
GCGGCCGACA AGCCGTTGCG CCTGGGCATC GAGGCTGCCT ACCCGCCGTT CGCCTACAAG
GAAGCCAACG GCGAGATTGC CGGTTTCGAT GTGGATATCG GCAACGCCCT GTGCGCAGAG
ATGAAGGTGC AGTGTCAGTG GGTCGAGCAG GAGTTCGACG GCCTGATCCC CTCGCTCAAG
GTGAAGAAGG TCGACGCGAT TCTCTCGTCC ATGACCATCA CCGACGAGCG GCGCAAGTCG
GTGGATTTCA CCGGCAAGTA CTACTACAGC CCGGCGCGTC TGGTGATGAA GGAGGGCAGT
ACGGTCGACG CCGATTTCGC CAACCTCAAG GGCAAGCGCA TCGGCGTGCA GCGCGCCACC
ACCACCGACC GCTTCGCCAG CTCGGTGATG GCCGCTCAGG GCGTACAGGT GGTGCGCTAC
AGCTCGCAGA ACGAAATCTA CCTGGACCTG ATCTCCGGAC GCCTGGACGG CACCCTGGCC
GATGCCATCC CGGTGGAAGA GGGTTTCCTC AAGACCCCTA ACGGCAAGGG CTTCGCCTTC
GTCGGCCCGT CCTTCACCGA CCCGGCCTAC TTCGGCGAGG GCGCCGGGAT TGCCGTGCGC
AAGGGCGACA GCGAATTGCT CGGCAAGCTC AACGCCGCCA TCGCCGCGAT TCGTGCCAGC
GGCGAGTACC AGCAGATTCA GCAGCGCTAC TTCAGCTTCG ATATCTACGG CGACTGA
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| Protein sequence | MKKIAWLGAI ALSLIASSPF AADKPLRLGI EAAYPPFAYK EANGEIAGFD VDIGNALCAE
MKVQCQWVEQ EFDGLIPSLK VKKVDAILSS MTITDERRKS VDFTGKYYYS PARLVMKEGS
TVDADFANLK GKRIGVQRAT TTDRFASSVM AAQGVQVVRY SSQNEIYLDL ISGRLDGTLA
DAIPVEEGFL KTPNGKGFAF VGPSFTDPAY FGEGAGIAVR KGDSELLGKL NAAIAAIRAS
GEYQQIQQRY FSFDIYGD
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