Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3572 |
Symbol | |
ID | 5106119 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3938764 |
End bp | 3941124 |
Gene Length | 2361 bp |
Protein Length | 786 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640504825 |
Product | DNA polymerase II |
Protein accession | YP_001189052 |
Protein GI | 146308587 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0417] DNA polymerase elongation subunit (family B) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.252391 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCAGTGC AGCAGGGTTT CGTTCTGAGT CGCCATTGGC GCGACACGCC GCAGGGCACC GAGGTGGCCT TCTGGCTGGC GACCGATGCC GGCCCGATAC AGGTGCGCCT GCCGGTTCAG CCGTCGGTGG CCTTTATTCC GGCCGAGCAG CGGGCCTGGG CCGAGCCGTT GCTGGCCGGC GAGCAGGGCG CCGAGCTGCG CGAGCTGGCG CTGCGCGACT TCAGGCAGCG CCCGGTGCTG GGGCTGTACT GCCAGCAGTA TCGCCAACTG CTGCAGCTGG AAAAGAAGCT GCGCCAGGCC GGCGTGGATG TCTATGAAGC CGATATCCGC CCGCCGGATC GCTATCTGAT GGAGCGCTTT ATCACCGCCA GCGTGACCTT TGAGGGCGTC GAGCAGCAGG ACGGCAGCCT GCTCTGCAAG TCGCTCAAGG CCGCTGCCGA TTACCGCCCG GCGCTGCGTC TGGTGTCGCT GGATATCGAG ACCAGCGCCC GCGGCGAGCT GTATTCCATC GCCCTGGAAG GCTGCGGCCA GCGCCAGGTG TACATGCTCG GGCCGGCCAA CGGCGATGCC AGCGGCGTGG ATTTCGAGCT GCAGTTCTGC GACAGCCGCA AGGCCCTGCT GGAACGGCTG AATGACTGGC TGGCGCGCTT CGATCCCGAC GCCATCATCG GCTGGAACCT GGTGCAGTTC GACCTGCGCG TGCTGCGCGA TCATGCCGAG CAACTCAAGG TGCCCCTGCG CCTCGGGCGG GGCGGCGACG TGATGGGCTG GCGCCAGCAC AACAGCAGCC AGCACTACTT CGCCGAGGCG GCCGGGCGGC TGATCATCGA CGGCATCGAG GCGCTGCGTT CGGCGACCTG GAGCTTCCCC TCGTTCAGCC TGGAGTCGGT GGCGCAGACC CTGCTCGGCG AGGGCAAGGC CATCGACACG CCCTATGCGC GGATGGACGA GATCCAGCGC ATGTTCGACG AGGACAAGCC GGCGCTGGCG CGCTACAACC TCAAGGATTG CGAGCTGGTC ACGCGCATCT TCGCTCACAC CGACCTGCTC GCCTTCCTCC TCGAGCGCTC CAGCGTCACC GGCCTGGCCG CCGATCGCAG TGGCGGCTCG GTGGCGGCCT TCACCCACCT GTACCTGCCG CCGATGCACC GCCTGGGCTT CGTCGCGCCG AACCTCGGCG ACATCCGTGG CGAGAACAGC CCCGGCGGTT TCGTCATGGA TTCGCGCCCT GGCCTGTACG ACTCGGTGCT GGTGCTGGAT TACAAGAGCC TGTATCCGTC GATCATCCGC AGCTTCCTGA TCGACCCGGT GGGGCTGGTG GAGGGGCTGC AGCAGCCGGA CGATGCGCAT TCGGTGGAAG GCTTTCGCGG CGCGCGTTTC TCGCGCAGCC GGCACTGCCT GCCGGCCATC GTCGAGCGGG TGTGGCAGGG GCGCGAGGCG GCCAAGCGCG ACGGCAACGC CGCGCTGTCG CAGGCGCTGA AGATCATCAT GAACGCCTTC TACGGCGTGC TCGGCTCCAG TGGCTGCCGC TTCTTCGACC CGCGCCTGGC CTCGTCCATC ACCCTGCGCG GGCATCAGAT CATGCGCCGC ACCCGCGAGC TGATCGAGGC CGAGGGCCAT GCGGTGATCT ACGGCGACAC CGACTCCACC TTCGTCTGGC TCGGCCGCGC CCACGACGAG GCCGAGGCGG CGCAGATCGG CCGCGCCCTG GTAGCCAGGG TCAATGCCTG GTGGCGCGAG CATCTAGCAG ATGAGTACGG CCTGACCAGC GCCCTGGAGC TGCAGTTCGA GACCCATTAC CGGCGCTTTC TCATGCCCAC CATTCGCGGC ACCGAGGAGG GCAGCAAGAA GCGCTACGCC GGCCTGGTAA GGGCGGCGGA TGGCAGCGAA CGCATGGTGT TCAAGGGGCT GGAGACGGTA CGCAGCGACT GGTCGCCGCT GGCTCAGCGC TTTCAGCAGG AGCTGTACCG CCTGGTGTTC GCCGGCCAGC CCTATGCGGA CTACGTGCGC GACTACGTCA AACGCACCCT GGCCGGCGAG CTGGACGAGC TGCTGGTCTA TCGCAAACGC CTGCGCCGCC GCCTCGACGA CTACCAGCGC AACGTGCCGC CGCACGTGCG CGCCGCACGC AGCGCCGACG AACACAACCA GCGCCTCGGC CGGCCGCTGC AGTACCAGCG CGGCGGCTGG ATCAGCTACC TGATCACCAC CACCGGGCCG CAACCGCTGG AACGCCTGCT GTCGCCCATC GACTACGAGC ACTACCTGAG CCGCCAGCTC AAGCCGGTGG CCGACGCCAT CCTGCCCTTC GTCGGCGGCG ATTTCGAGCG GCTGGTGGAC GGACAGCTGG GCCTTTTCTA G
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Protein sequence | MAVQQGFVLS RHWRDTPQGT EVAFWLATDA GPIQVRLPVQ PSVAFIPAEQ RAWAEPLLAG EQGAELRELA LRDFRQRPVL GLYCQQYRQL LQLEKKLRQA GVDVYEADIR PPDRYLMERF ITASVTFEGV EQQDGSLLCK SLKAAADYRP ALRLVSLDIE TSARGELYSI ALEGCGQRQV YMLGPANGDA SGVDFELQFC DSRKALLERL NDWLARFDPD AIIGWNLVQF DLRVLRDHAE QLKVPLRLGR GGDVMGWRQH NSSQHYFAEA AGRLIIDGIE ALRSATWSFP SFSLESVAQT LLGEGKAIDT PYARMDEIQR MFDEDKPALA RYNLKDCELV TRIFAHTDLL AFLLERSSVT GLAADRSGGS VAAFTHLYLP PMHRLGFVAP NLGDIRGENS PGGFVMDSRP GLYDSVLVLD YKSLYPSIIR SFLIDPVGLV EGLQQPDDAH SVEGFRGARF SRSRHCLPAI VERVWQGREA AKRDGNAALS QALKIIMNAF YGVLGSSGCR FFDPRLASSI TLRGHQIMRR TRELIEAEGH AVIYGDTDST FVWLGRAHDE AEAAQIGRAL VARVNAWWRE HLADEYGLTS ALELQFETHY RRFLMPTIRG TEEGSKKRYA GLVRAADGSE RMVFKGLETV RSDWSPLAQR FQQELYRLVF AGQPYADYVR DYVKRTLAGE LDELLVYRKR LRRRLDDYQR NVPPHVRAAR SADEHNQRLG RPLQYQRGGW ISYLITTTGP QPLERLLSPI DYEHYLSRQL KPVADAILPF VGGDFERLVD GQLGLF
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