| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3570 |
|---|
| Symbol | |
|---|
| ID | 5106117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3936972 |
|---|
| End bp | 3937586 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640504823 |
|---|
| Product | isochorismatase hydrolase |
|---|
| Protein accession | YP_001189050 |
|---|
| Protein GI | 146308585 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.411732 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.268452 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTTA CCTACAAGCG TCTGAACAAG GACGATGCCG TCGTGCTGCT GGTCGACCAC
CAGGCCGGCC TGCTCTCGCT GGTGCGTGAC TACTCGCCGG ACGAGTTCAA GAACAACGTG
CTGGCGCTGG CCGATATCGC CAAGTTCTTC AACCTGCCGA CCATCCTCAC CACCAGCTTC
GAGAACGGCC CCAACGGCCC GATCGTGCCC GAGCTCAAGG CCATGTTTCC CGATGCTCCC
TATATCGCCC GGCCGGGGCA GATCAACGCC TGGGACAACG CCGACTTCGT CAAGGCCATC
GAAGCCACCG GGCGCAAGCA ACTGATCATC GCCGGGGTGG TCACCGACGT CTGCGTCGCC
TTCCCGACCC TGTCGGCGCT GGAGGCCGGC TATGAGGTCT TCGTCGTCAC CGATGCTTCG
GGCACCTTCA ATACCAGCGT GCGCGATGCC GCGCTGATGC GTATGGCCCA CGCCGGCGCG
CAGATGCTCA ACTGGTTCAG CGTCGGCTGC GAACTGCACC GCGACTGGCG CAACGACATC
GAGGGCTTCG GCGGCATCCT CGGCGGGCAC CTGCCGGCCT ACGCCAACCT GATCCAGAGC
TACAGCCAGA AGTGA
|
|---|
| Protein sequence | MSFTYKRLNK DDAVVLLVDH QAGLLSLVRD YSPDEFKNNV LALADIAKFF NLPTILTTSF
ENGPNGPIVP ELKAMFPDAP YIARPGQINA WDNADFVKAI EATGRKQLII AGVVTDVCVA
FPTLSALEAG YEVFVVTDAS GTFNTSVRDA ALMRMAHAGA QMLNWFSVGC ELHRDWRNDI
EGFGGILGGH LPAYANLIQS YSQK
|
|---|
| |