Gene Pmen_3563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3563 
Symbol 
ID5106110 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3929551 
End bp3930489 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content64% 
IMG OID640504816 
Productcyclic nucleotide-binding protein 
Protein accessionYP_001189043 
Protein GI146308578 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.187188 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCGG CGCACTGGCA GGCAGACCTG CATCAAATCC GACAACTGCG GCTGTTTCAC 
AAGGTGGCCG CCAGCAGCCT GGACCACCTG CTGCAGGAGT TCCGCGCCTG CGAGCTGGAG
GCTGGCGAAG TCCTGCTCTC TCCTTTCAAC CGCAACCAGC ATCTCTACCT GCTGATCGAA
GGTCAGCTGC GCGTCTACCT CGGCTCGCTG GACAACCAGG CGGTCAGCAC CCTGGAGGTC
GGCGACTGCG CCGGCGAAAT CAGCTTCATC GACAACGAAC ACCCTTCTGC CTACGTGGTG
GCCGAGCGCC GCTCCACCGT CTTGCGCCTG CACCGCGAGT CGCTGGTGGC GCTGTTCCAA
GAGTCGCCGC AGATGATGCA GAACCTGCTG GAGCTGCTCT GCGAGCGGGT GCGCAAGGGC
AATCGGCTGA TTCTCGACAG CGAGCAGAAC GCCAACGTCG ACACCTTGAC CGGCTGCTTC
AACCGGCGCT GGCTGGAGCA TGTGTTCGAA CGCGAAAGCA CCCGCTGCGC CTTCAATGAC
GAGCCCTTGT CGTTGCTGAT GCTGGATGTC GATCACTTCA AGGCCTACAA CGACCAGCAT
GGCCATCTGG CCGGCGACTA CGCCCTGTGC CTGGTCGCCC ATACCCTGCG CAGCCAGCTG
CGACCCAAGG ACAGCCTGAT CCGCTTCGGC GGCGAGGAGT TCGTCATCCT CCTGCCGGAA
ATCTCCGCCG AGTCCGCACG CGGCATCGGC GAGCGCCTGC GTGTCAGCCT GGAGCAGATC
GCCTCCTTCT ATTCCCCGGT CGGCATCCTG CCCGGCGTGA CCATCTCCAT CGGCCTGGCG
CAGATGCAGC AGAAGGACAG CCTGCAGGGC CTGATCGCCC GCGCCGATGC CGCGCTGTAC
CAGGCCAAGC AACAGGGGCG CAACTGCCTC TGCGGTTAA
 
Protein sequence
MKPAHWQADL HQIRQLRLFH KVAASSLDHL LQEFRACELE AGEVLLSPFN RNQHLYLLIE 
GQLRVYLGSL DNQAVSTLEV GDCAGEISFI DNEHPSAYVV AERRSTVLRL HRESLVALFQ
ESPQMMQNLL ELLCERVRKG NRLILDSEQN ANVDTLTGCF NRRWLEHVFE RESTRCAFND
EPLSLLMLDV DHFKAYNDQH GHLAGDYALC LVAHTLRSQL RPKDSLIRFG GEEFVILLPE
ISAESARGIG ERLRVSLEQI ASFYSPVGIL PGVTISIGLA QMQQKDSLQG LIARADAALY
QAKQQGRNCL CG