Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3563 |
Symbol | |
ID | 5106110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 3929551 |
End bp | 3930489 |
Gene Length | 939 bp |
Protein Length | 312 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640504816 |
Product | cyclic nucleotide-binding protein |
Protein accession | YP_001189043 |
Protein GI | 146308578 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.187188 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCGG CGCACTGGCA GGCAGACCTG CATCAAATCC GACAACTGCG GCTGTTTCAC AAGGTGGCCG CCAGCAGCCT GGACCACCTG CTGCAGGAGT TCCGCGCCTG CGAGCTGGAG GCTGGCGAAG TCCTGCTCTC TCCTTTCAAC CGCAACCAGC ATCTCTACCT GCTGATCGAA GGTCAGCTGC GCGTCTACCT CGGCTCGCTG GACAACCAGG CGGTCAGCAC CCTGGAGGTC GGCGACTGCG CCGGCGAAAT CAGCTTCATC GACAACGAAC ACCCTTCTGC CTACGTGGTG GCCGAGCGCC GCTCCACCGT CTTGCGCCTG CACCGCGAGT CGCTGGTGGC GCTGTTCCAA GAGTCGCCGC AGATGATGCA GAACCTGCTG GAGCTGCTCT GCGAGCGGGT GCGCAAGGGC AATCGGCTGA TTCTCGACAG CGAGCAGAAC GCCAACGTCG ACACCTTGAC CGGCTGCTTC AACCGGCGCT GGCTGGAGCA TGTGTTCGAA CGCGAAAGCA CCCGCTGCGC CTTCAATGAC GAGCCCTTGT CGTTGCTGAT GCTGGATGTC GATCACTTCA AGGCCTACAA CGACCAGCAT GGCCATCTGG CCGGCGACTA CGCCCTGTGC CTGGTCGCCC ATACCCTGCG CAGCCAGCTG CGACCCAAGG ACAGCCTGAT CCGCTTCGGC GGCGAGGAGT TCGTCATCCT CCTGCCGGAA ATCTCCGCCG AGTCCGCACG CGGCATCGGC GAGCGCCTGC GTGTCAGCCT GGAGCAGATC GCCTCCTTCT ATTCCCCGGT CGGCATCCTG CCCGGCGTGA CCATCTCCAT CGGCCTGGCG CAGATGCAGC AGAAGGACAG CCTGCAGGGC CTGATCGCCC GCGCCGATGC CGCGCTGTAC CAGGCCAAGC AACAGGGGCG CAACTGCCTC TGCGGTTAA
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Protein sequence | MKPAHWQADL HQIRQLRLFH KVAASSLDHL LQEFRACELE AGEVLLSPFN RNQHLYLLIE GQLRVYLGSL DNQAVSTLEV GDCAGEISFI DNEHPSAYVV AERRSTVLRL HRESLVALFQ ESPQMMQNLL ELLCERVRKG NRLILDSEQN ANVDTLTGCF NRRWLEHVFE RESTRCAFND EPLSLLMLDV DHFKAYNDQH GHLAGDYALC LVAHTLRSQL RPKDSLIRFG GEEFVILLPE ISAESARGIG ERLRVSLEQI ASFYSPVGIL PGVTISIGLA QMQQKDSLQG LIARADAALY QAKQQGRNCL CG
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