| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3560 |
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| Symbol | |
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| ID | 5106107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3925178 |
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| End bp | 3926206 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640504813 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001189040 |
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| Protein GI | 146308575 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.801082 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATGG TGAAATCCAC CCTGGCTGTG CTGACCACCG CAGCTGTTCT CGGTGTCAGT
GGCTTTGCTC AGGCAGGCGC CACCCTGGAT GCGGTGCAGA AGAAAGGCTT CGTGCAGTGC
GGTATCAGCG ACGGTCTGCC GGGCTTCTCC TACGCCGATG AAAAAGGCAA TTACCTGGGT
CTGGACGTCG ACGTCTGCCG TGCTGTTGCA GCCGCGGTTT TCGGTGACGC CACCAAGGTC
AAGTACAGCC CGCTGACCGC CAAGGAGCGC TTCACCGCGC TGCAGTCCGG CGAAGTCGAC
ATCCTGTCGC GCAACACCAC CTGGACCAGC TCGCGTGACT CCGGTCTGGG TCTGAACTTC
GCTGGCGTGA ACTACTACGA CGGTCAGGGT TTCCTGGTTA ACAAGAAGCT GGGTGTTTCC
AGCGCCAAGG AACTGGATGG TGCCACCGTG TGCATCCAGG CCGGTACCAC CACCGAGCTG
AACCTCTCCG ACTACTTCCG TGCCAACGGC CTGAAGTACA CCCCCATCAC CTACGATACC
TCCGACGAGA GCGCCAAATC GGTCGAAGCC GGCCGTTGCG ACGTGCTGAC CTCCGACCAG
TCGCAGCTGT ACGCGCAGCG CATCAAGCTG GCCAACCCGG ACGACTACGT GGTGCTGCCG
GAAGTCATCT CCAAGGAGCC TCTGGGCCCG GTCGTGCGTC AGGGCGATGA CGAGTGGTTC
AACATCGTGC GCTGGTCGCT GTTCGCCATG GTCAACGCCG AGGAGCTGGG CGTGACCTCC
GCCAACGTGG AAGAAACCGC CAAAACCACC AAGAACCCCG ACGTAGCCCG TCTGCTCGGT
GCCGAAGGTG AGTTTGGCAA GGACCTGAAA CTGCCGAAGG ACTGGGCAGT ACAGATCGTC
AAGCAGGTAG GTAACTACGG CGAGTCCTTC GATCGCAACG TCGGTGCCGG CAGCGAGCTG
AAGATCGAGC GTGGCCTCAA TGCCCTGTGG AACAAAGGTG GTCTGCAATA CGCACCGCCG
GTGCGTTGA
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| Protein sequence | MKMVKSTLAV LTTAAVLGVS GFAQAGATLD AVQKKGFVQC GISDGLPGFS YADEKGNYLG
LDVDVCRAVA AAVFGDATKV KYSPLTAKER FTALQSGEVD ILSRNTTWTS SRDSGLGLNF
AGVNYYDGQG FLVNKKLGVS SAKELDGATV CIQAGTTTEL NLSDYFRANG LKYTPITYDT
SDESAKSVEA GRCDVLTSDQ SQLYAQRIKL ANPDDYVVLP EVISKEPLGP VVRQGDDEWF
NIVRWSLFAM VNAEELGVTS ANVEETAKTT KNPDVARLLG AEGEFGKDLK LPKDWAVQIV
KQVGNYGESF DRNVGAGSEL KIERGLNALW NKGGLQYAPP VR
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