| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3559 |
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| Symbol | |
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| ID | 5106106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3923895 |
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| End bp | 3925079 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640504812 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001189039 |
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| Protein GI | 146308574 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4597] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.527755 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAACTA CTGCTAATGC CCCGCGCCCG CGAGGTTCGG TCTGGACCGA TCCTCAGGTG
CGCGCGTGGC TGTTCCAGAT TCTCGCCGTT ATCGCCGTCG TGGCGCTCGG CTGGTTCCTG
TTCCAAAACA CTCAGACCAA CCTGGAGAAG CGCGGCATCG TCTCCGGCTT CGGTTTCCTC
AGTAACAGCG CCGGTTTCGG CATTGCCCAG CATCTGATCG ACTACAGCGA AAGCGATTCC
TACGGACGGG TATTCGTCAT CGGCCTGCTC AATACGCTGC TGGTGTCCTT CATCGGCATC
GTGCTGGCCT CCATCCTCGG CTTCATCCTG GGCGTGGCGC GGCTGTCGCC GAACTGGCTG
ATCAGCAAGC TGGCCACCGT CTACATCGAG ATCTTCCGCA ACATCCCGCC GCTGCTGCAG
ATTCTCTTCT GGTACTTCGC GGTGTTTCTC GCCCTGCCGG GACCGCGGCA GAGCCTGGAC
ATCGGCGAAA CCTTCTTCCT CAACAGCCGT GGTCTGTACA TGCCGGCGCC CGGTCCGTCG
GAGAGTTTCG GTCTGTTCGC CGTGGTCCTG CTGGCCACCA TCGTCGGCAT CATCGCCCTG
GGCCGCTGGG CCAAGAAGCG CCGTGAGGCC ACCGGCAAGA TCTTCCCGCT GCTGTGGACC
TCCCTGGCGC TGATCGTGGT GATTCCCGGC CTGACCGTGC TGATCGGCGG CAACCCGCTG
GTGTGGAGCG TGCCGGAGCT GCGCGGTTTC AACTTCCGCG GCGGCTGGGT GATGATCCCC
GAGCTGATGG CCCTGACCCT GGCGCTGACC ATCTACACCG CGGCCTTCAT CGCCGAGAAC
GTGCGCTCGG GAATCATGGC GGTCAGCCAT GGCCAGACCG AGGCAGCCCG TTCGCTGGGT
CTGCGCCCCG GCATCACCCT GCGCCTGGTG ATCATCCCGC AGGCATTGCG CGTGATCATC
CCGCCGCTGA CCAGCCAATA CCTGAACCTG GCGAAGAACT CCTCGCTGGC CGCCGGCATC
GGCTACCCGG ACATGGTGTC GCTGTTCGCC GGCACGGTAC TCAACCAGAC CGGCCAGGCC
ATCGAGGTGA TCGCCATCAC CATGAGCGTG TACCTGGCGA TCAGCATCAG CATTTCCCTG
CTGATGAACT GGTACAACAA GCGCATTGCG CTGATCGAGC GGTAA
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| Protein sequence | MQTTANAPRP RGSVWTDPQV RAWLFQILAV IAVVALGWFL FQNTQTNLEK RGIVSGFGFL
SNSAGFGIAQ HLIDYSESDS YGRVFVIGLL NTLLVSFIGI VLASILGFIL GVARLSPNWL
ISKLATVYIE IFRNIPPLLQ ILFWYFAVFL ALPGPRQSLD IGETFFLNSR GLYMPAPGPS
ESFGLFAVVL LATIVGIIAL GRWAKKRREA TGKIFPLLWT SLALIVVIPG LTVLIGGNPL
VWSVPELRGF NFRGGWVMIP ELMALTLALT IYTAAFIAEN VRSGIMAVSH GQTEAARSLG
LRPGITLRLV IIPQALRVII PPLTSQYLNL AKNSSLAAGI GYPDMVSLFA GTVLNQTGQA
IEVIAITMSV YLAISISISL LMNWYNKRIA LIER
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