| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3558 |
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| Symbol | |
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| ID | 5106105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3922788 |
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| End bp | 3923885 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640504811 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001189038 |
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| Protein GI | 146308573 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.650064 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTCTC ATACCTTCAA ACCGGATCTG CCGCCGCCAC GCATGAGTGT CGGCGCAGTG
GGCTGGCTCA AGGCCAACCT GTTCTCCAAC TGGTTCAACA CCCTGTTGAC CCTGTTCGCC
ATCTACCTGA TCTGGCTGAT CGTGCCGCCG CTGATCCAGT GGGCCTTCAT CGACGCCACC
TGGAGCGGCA GCACCCGCGC CGACTGCACC GGCGGAGGCG CCTGCTGGGT GTTCATCCAG
CAGCGTTTCG GCCAGTTCAT GTACGGCTTC TATCCCAGCG AGCTGCGCTG GCGTGTAGAT
ACCACCCTGT GGCTGGCGAT CATCGGCGCT GCGCCCTTGT TCGTACCGCA GATGCCACGC
AAGGCGTTCT ACGGCCTGGC GTTCCTGGTG ATCTACCCGG TCGTCGCCTG GTGCCTGCTG
CACGGCGGCG TGTTCGGCCT CAGCGTGGTT CCCACCAGCC AGTGGGGCGG CCTGATGCTG
ACCCTGGTGA TCGCCGCCGT CGGCATCACC GGTGCGCTGC CGCTGGGCAT CCTGCTGGCG
CTTGGGCGCC GCTCCAACAT GCCGGCGATC AGGGTCATCT GCGTGACCTT CATCGAGTTC
TGGCGCGGTG TGCCGCTGAT CACCGTGCTG TTCATGTCCT CGGTGATGCT GCCGCTGTTC
CTGCCCGAGG GCATGCACTT CGACAAGCTG ATGCGGGCGC TGATCGGGGT GATCCTGTTC
CAGTCCGCCT ACATCGCCGA AGTGGTACGC GGCGGCCTGC AGGCCATCCC CAAGGGCCAG
TACGAAGCGG CCGCGGCCAT GGGCCTGGGC TACTGGCGGA TGATGGGCCT GGTGATCCTG
CCGCAGGCGC TCAAGCTGGT CATCCCCGGC ATCGTCAACA CCTTCATTTC GCTGTTCAAG
GACACCAGCC TGGTGATCAT CATCGGCCTG TTCGACCTGC TCAACAGCAT CAAGCAGGCG
ACCACCGACC CGGCCTGGCT GGGCATGGCC ACCGAAGGCT ATGTGTTCGC GGCGCTGATC
TTCTGGATTT TCTGTTTTGG TATGTCCCGC TACTCCATGC ATCTGGAGCG CAAGCTGGAC
ACCGGCCACA AGCGTTAG
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| Protein sequence | MQSHTFKPDL PPPRMSVGAV GWLKANLFSN WFNTLLTLFA IYLIWLIVPP LIQWAFIDAT
WSGSTRADCT GGGACWVFIQ QRFGQFMYGF YPSELRWRVD TTLWLAIIGA APLFVPQMPR
KAFYGLAFLV IYPVVAWCLL HGGVFGLSVV PTSQWGGLML TLVIAAVGIT GALPLGILLA
LGRRSNMPAI RVICVTFIEF WRGVPLITVL FMSSVMLPLF LPEGMHFDKL MRALIGVILF
QSAYIAEVVR GGLQAIPKGQ YEAAAAMGLG YWRMMGLVIL PQALKLVIPG IVNTFISLFK
DTSLVIIIGL FDLLNSIKQA TTDPAWLGMA TEGYVFAALI FWIFCFGMSR YSMHLERKLD
TGHKR
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