Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3556 |
Symbol | |
ID | 5106103 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 3920910 |
End bp | 3921869 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640504809 |
Product | transcriptional regulator |
Protein accession | YP_001189036 |
Protein GI | 146308571 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.253425 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCACTG TCGCCCTCTA TGTCTGCCCG CAAACCATCT GCTCGAGCCT GAGCATGGCA CAGGATGCCT TCAGTCTCGC CAATCGGCTG GCGGGCACAC CGCGCTTTCA CCTGCAGCGC TTCAGCCTCG ATGGCCAGCC GGTGCAACTG GAGTTCGCCC AGGTTCAGGT CAACGGCGGT CTGGAGCTGG CCGAGCGGGC CGACCTGCTG ATCCTGCCAG CCACCGGCAG CGCCATCTCC CGTACGCTGG AGGGCAATGC CGGCCTGCTG CCCTGGCTGG CTCGCCGCCA GCAGCAGGTG GCAAGCCTGT GCAGCAGCGC CTTTCTGCTG GCGGCCGCCG GGCTGCTCGA CGGTCGCCAG GCCACCACCC ACTGGGCCCT GGCCGAGACC TTTACCCGAC ATTTTCCCCG CGTGAACCTG CGCAGCGACC TGCTGCTGAC CGAGGACGGC CCGCTGTTCT GCTCCGGCGG CGCCCAGGCG GGGCTCGACC TGTGCCTGCA CCTGATCGCC CTGCATGGCG GCGAATGGCT GGCGCAGCAG GTCGCCAGCG CTATGGTGGT GGAGCGTCAG CGCGGCCCGC AGTCACGCTT CGCCCCTCTA CTACCCGCCA GCGATGACAC GACCCTGGCG CCGCTGCTCG ACTGGTTGCG CCGCCATCAT GCCGAATCCG TCGATCTGGC CAGCCTGGCC GAGCAGGCGC ACTGCTCGCC GCGCACCCTG CTGCGCCGCT TCAAGACCGC CACCGGGCTG ACGCCCAACG ACTACCTGCA GCGCCTGCGC ATCGCCAACG CGCAGCAGGC GCTGGCCCGC TCCGGCGATT CGCTGGAGCG GATCGCCGCC GCGGTCGGCT ATGCCGATCG CGCCACCTTC GCCAAGCTGT TCAAGCAGCT GTGCGGCGAG ACGCCCGGCG CGTTTCGCAA GCGCATGCAG GGCAACGGGG CCGCACCGCC GGCCCCGTAG
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Protein sequence | MLTVALYVCP QTICSSLSMA QDAFSLANRL AGTPRFHLQR FSLDGQPVQL EFAQVQVNGG LELAERADLL ILPATGSAIS RTLEGNAGLL PWLARRQQQV ASLCSSAFLL AAAGLLDGRQ ATTHWALAET FTRHFPRVNL RSDLLLTEDG PLFCSGGAQA GLDLCLHLIA LHGGEWLAQQ VASAMVVERQ RGPQSRFAPL LPASDDTTLA PLLDWLRRHH AESVDLASLA EQAHCSPRTL LRRFKTATGL TPNDYLQRLR IANAQQALAR SGDSLERIAA AVGYADRATF AKLFKQLCGE TPGAFRKRMQ GNGAAPPAP
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