| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3538 |
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| Symbol | |
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| ID | 5106006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3900155 |
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| End bp | 3903589 |
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| Gene Length | 3435 bp |
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| Protein Length | 1144 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640504791 |
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| Product | SMC domain-containing protein |
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| Protein accession | YP_001189018 |
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| Protein GI | 146308553 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.862786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.561749 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATCC TCAGCCTGCG CCTCAAGAAC CTCAACTCGC TCAAGGGCGA ATGGAAGATC
GATTTTGCTG CCGAGCCCTT CGCCGGCAGC GGCCTGTTCG CCATCACCGG GCCGACCGGC
GCGGGCAAGA CCACCTTGCT CGATGCCATC TGCCTGGCCC TGTACCACCG CACACCGCGA
ATGAGCACGC TGTCGGCCAG CGGCAACGAG CTGATGACCC GGCACACCGC CGACTGCCTG
GCCGAGGTGG AATTCGAGGT GAAAGGGCAG GGCTATCGCG CCTTCTGGAG CCAGCGCCGC
GCGCGGGATA AGGTCGAAGG CGCGCTGCAG GCGCCCAAGG TGGAGCTGGC GCGCATTGCC
GACGGTGAAA TCCTCACCGA CAAGATTCGC GAGAAGGAAC ATCTCACCGC CGAACTGACC
GGACTGGACT TCGAGCGTTT CACCAAATCC ATGCTGCTGG CCCAGGGCGG TTTCGCGGCC
TTCCTCGAGG CCAACGCCAA CCAGCGTGCC GAGCTGCTGG AGGAACTGAC CGGCACCGAG
GTGTACGGAC TGATCTCGCA GCAGGTCTAC GAGCGCACCA AGGCGTCGGA GCAGGCGCTG
AATCTGCTGA AAAGCCGCGC TCAGGGCATG GAGCTGCTGG ACGAGGCGCA GCGCGCCGAA
TTGCAGGCCG AGCATCAGCG CCTGAATCAG GAGGAGGCGT CGCTGCTGGC TCGGCAACAG
GCCCTGCAAG GCCAGCGCCG CTGGTGCGAA GCCCTGCAAC AGGCCGAGCA GCAATGCGAG
CGGGCGCGAC TGGGACTGGA GCAGGCGCAG CAGGCGCACA ACGAGGCGGC CGGCGAGCTG
CAGCGTCTTG CCGCCAGTGA ACCGGCCGCG CGCCTGCAGC CGCTGTATCA GAGCTGGCAG
CAGCTGCAGC AAGACCGACA GCAGGCGCAG CAGGAGCTGG ACGATATGCA GGCGCAGCAG
CGCCACAGCA GCGAGCGCGA ACACCAGCAA CTCTGGCTGG CCAGCCGCTA CGCCCGGCAA
TGCCTGAGCC TGCACCAGAG CGAAGAGCGG AGCCTGGCCG AGCAGCGTGA CGCGCTGCAA
GCGCGTTTGA GGGCTACCCC GCAACGTGCC CGCCTGGGTG AGTTGCTTGG CGGCTGGCGC
GCGCAGTTCG ATCAGCGCGG GCAACTGCTC ATGCGGCAGC AGACGCTGCG CGCGGGCATG
GCGCAGGAGC GCGAGCAGCT CGCTACCTTG CAACGGCAGC GTGATCAGCT CGCCGCGCAG
CAGACGGACG CGGCGACGCG GCTGGAGCAG GCGCAGGCCC GCGAAGCCGG ACAGCACAGC
GAGCTGCAGG CGTTGCTCGG CGCGGACGAC GAGGCCGGGC TGCGGCAGCG CTGGCAGCAG
CTGCAGGTGC AGGGACGGGC GCTGGATCGC CTGGAACAAC TGGCGCAGAG CCGCGAGCAG
ATGGCCGAAC AGATCGCCGA GCTGACCCCG CGCCTGGCGC AGCTGCACAC GCAGCACGCC
GCCAAGAACG ATGAAATCAT CGGCCTGCGT GAGCGCTACA AGGTGCTCAA GCAGCAGGTT
GCCGACAAGG AAAAGCTGCT GGAGCAGGAG CAGCGCATTC AGGATCTGGA AGCCTATCGT
GCCCATCTGC AGCCGGGCGA AGCCTGCCCA TTGTGCGGCT CGCACGAGCA TCCGGCGGTC
AGCCAGTACC AGGCGCTGGA TGTCTCCGCC ACGCGCCAGG CGCTGGAGCA GTGCCGCAGC
GATCTGGCGC GGCTGGAAAG CCAGGGCGGC ACCCTGCGCG ACGAACTGAC CCGTCTGGCC
ACGCAGATCG CCCAGCTGCA GCAGCAACTG GAACAGGCAC AACAGCGCGT CGCTCAGCAG
GACGCGCAGT GGCAGCAGCA ACTGGCCGAG CAGGCCCTGC AGATCGCCGA TGGTGCAGCG
CTGCGTCAGT TGCAGCGTGA GCATGAGCAG CATCTGGGGC AGCTGCAGCA GCGTCTCGCC
CAGGTCGAAA CCCGCCAGGC CGAGCTGACG CAGGCGCGCA GTGCTCGTGA GATTGCCGAA
CGAGCGCTGG CCGATATGCA GCAACGCCTG GCGCTGCTGG CGCGCGATGA AGAAAACCTG
CAGGCGCGTC AACGCGAACA GAACGAGCGT CTGCAGGGGC TGGAGCAGGA ACTGCGGCAT
CACGATCAGG CGCTGCTGGC CAGCCTCGAT GGCTTTGCCT CGGAGTTGCC GGCCGACGCC
GACACCTGGC TGGCCGAGCA GGCCAGCGCC TGGCGCGACT GGCAGCAGGC TCAGGCGCAG
CACCAGCAGG TGCAGGAGCA GCTGCGTGAA ACCCAGCGTC TGCTCGCCGA AGCCGAGGCC
CGGGCCGAGC AATGGCAACA GCGCTGGCAG ACCGAACAGG CCCAGGCGCT GATCGAGCCC
GAGCCAGTGG CGCAGCCCGA GCAGGCCCTG CAAGGTGCCA TCGACAGCCT GGCCAGCGCG
CAGCGCGAAA GCGATGCCCT GCGTGGCCGG CAGCAGAGCC AGCAGAGCCT GCTGCAGCAA
TTGCAGCAGC GCCTGAGCGA AGCCGAGCAG CGCTGGCAGC AGGCGCTGGC GGCCAGCCCC
TTCACTGACC TGCAGGCATT TCTCGACGCG CTGCTGGACG ATGAAGAACG TGAGCGTCTG
ACGAGTTTGC AGGCGCGTCT GCAGCAAGCC CTTACCGAGG CCACGACATT GTTGGCCGCC
GCCGACGCGC AATGGCAGCA ACTGAGCACG ACGCCGCAGA CCGAGCTGAC GCTGGCCGAG
CTGGACGAGC AGCTGCAGGC GCTGCAACTG ACCTTGCGCG AGCTGAGCCA GCGTCAGGGC
GAGCTGCGCG CCCAGTTGCA GGCGGACGAT GCGCGGCGCA GCAGCCAGCA GGCGCTGTTC
GCCGAGATCG CCGCCCAGGA GAGCGAGCAC GCCTTGTGGC AGCAGCTCAA CGGCCTGATC
GGTTCGGCCG ATGGCGCCAA GTTCCGCAAG TTCGCCCAGG GCCTGACCCT CGATCACCTG
ATCCACCTGG CCAATCGCCA ACTGACGCGC CTGCACGGCC GCTACCAGCT GGCGCGCAAG
AGCAGCGGCG AACTGGAGCT GGAGGTGTGC GACACCTGGC AGGCCGACGT GGCGCGCGAC
TGCCGCACCC TGTCCGGCGG CGAGAGCTTT CTGGTCAGCC TGGCGCTGGC CCTGGCGCTG
TCGGATCTGG TCAGCCACAA GACCAGCATC GACTCGCTGT TTCTCGACGA GGGCTTCGGT
ACGCTCGATG GCGAAACCCT GGAAGTGGCG CTCGATGCCC TGGATAACCT CAACGCCAGC
GGCAAGACCA TCGGCGTGAT CAGCCACGTC GAGGCGATGA AGGAGCGCAT TCCCGTGCAG
CTGCGGGTGC ACAAGGGCGT CGGCCTCGGC TACAGCCGGC TCGACGCACG TTTTGCGGTG
AAGGAAGGAG CGTAG
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| Protein sequence | MKILSLRLKN LNSLKGEWKI DFAAEPFAGS GLFAITGPTG AGKTTLLDAI CLALYHRTPR
MSTLSASGNE LMTRHTADCL AEVEFEVKGQ GYRAFWSQRR ARDKVEGALQ APKVELARIA
DGEILTDKIR EKEHLTAELT GLDFERFTKS MLLAQGGFAA FLEANANQRA ELLEELTGTE
VYGLISQQVY ERTKASEQAL NLLKSRAQGM ELLDEAQRAE LQAEHQRLNQ EEASLLARQQ
ALQGQRRWCE ALQQAEQQCE RARLGLEQAQ QAHNEAAGEL QRLAASEPAA RLQPLYQSWQ
QLQQDRQQAQ QELDDMQAQQ RHSSEREHQQ LWLASRYARQ CLSLHQSEER SLAEQRDALQ
ARLRATPQRA RLGELLGGWR AQFDQRGQLL MRQQTLRAGM AQEREQLATL QRQRDQLAAQ
QTDAATRLEQ AQAREAGQHS ELQALLGADD EAGLRQRWQQ LQVQGRALDR LEQLAQSREQ
MAEQIAELTP RLAQLHTQHA AKNDEIIGLR ERYKVLKQQV ADKEKLLEQE QRIQDLEAYR
AHLQPGEACP LCGSHEHPAV SQYQALDVSA TRQALEQCRS DLARLESQGG TLRDELTRLA
TQIAQLQQQL EQAQQRVAQQ DAQWQQQLAE QALQIADGAA LRQLQREHEQ HLGQLQQRLA
QVETRQAELT QARSAREIAE RALADMQQRL ALLARDEENL QARQREQNER LQGLEQELRH
HDQALLASLD GFASELPADA DTWLAEQASA WRDWQQAQAQ HQQVQEQLRE TQRLLAEAEA
RAEQWQQRWQ TEQAQALIEP EPVAQPEQAL QGAIDSLASA QRESDALRGR QQSQQSLLQQ
LQQRLSEAEQ RWQQALAASP FTDLQAFLDA LLDDEERERL TSLQARLQQA LTEATTLLAA
ADAQWQQLST TPQTELTLAE LDEQLQALQL TLRELSQRQG ELRAQLQADD ARRSSQQALF
AEIAAQESEH ALWQQLNGLI GSADGAKFRK FAQGLTLDHL IHLANRQLTR LHGRYQLARK
SSGELELEVC DTWQADVARD CRTLSGGESF LVSLALALAL SDLVSHKTSI DSLFLDEGFG
TLDGETLEVA LDALDNLNAS GKTIGVISHV EAMKERIPVQ LRVHKGVGLG YSRLDARFAV
KEGA
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