Gene Pmen_3528 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3528 
Symbol 
ID5105996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3887483 
End bp3887902 
Gene Length420 bp 
Protein Length139 aa 
Translation table11 
GC content65% 
IMG OID640504781 
ProductDNA polymerase III, chi subunit 
Protein accessionYP_001189008 
Protein GI146308543 
COG category[L] Replication, recombination and repair 
COG ID[COG2927] DNA polymerase III, chi subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0021621 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value0.458218 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAGAA TCGAGTTCTA CGTTCTCTCC TCCAGCGACG CCGAAGGTCG CCTGCGCGCG 
GCCTGCCAAC TGGCGCTCAA GGCCTGGGGC GCCGGCCTGC CGGTGTTCGT CCGGGGCAGC
GACGAGGCGC AGTGCATCGA GCTCGACGAA CTGCTGTGGC GCTTCAAGGC CGAGCGCTTC
GTGCCCCACG ACCTGCACCG CGACGCGCCG CAGGCACCGG TGGTACTGGG CGTGGACGAA
GTGCCGAGCC ACGAGCAAGG CGTGCTGATC AACCTTGGCA GCAGCCTGTC TCCGCATGTC
GAACGCTTCT CCCGCATCAT CGAGATCGTC AACCAGCAGC CGGAACTGCT GAGCGCCTGT
CGCGAGAATT TCCGTAACTA TCGCCAGCGC GGGTATGATC CCAAACGCGT CGAACTTTAA
 
Protein sequence
MPRIEFYVLS SSDAEGRLRA ACQLALKAWG AGLPVFVRGS DEAQCIELDE LLWRFKAERF 
VPHDLHRDAP QAPVVLGVDE VPSHEQGVLI NLGSSLSPHV ERFSRIIEIV NQQPELLSAC
RENFRNYRQR GYDPKRVEL